gtex

There are 1 repository under gtex topic.

• nuno-agostinho / psichomics

  Interactive R package to quantify, analyse and visualise alternative splicing

  splicing-quantificationdata-analysesalternative-splicingtcgadifferential-splicing-analysisgtexsurvivalbioconductorsrarecount2differential-gene-expressiongene-expressionrna-seq-datavast-tools
  Language:R 33

• vermasrijan / srijan-gsoc-2020

  Healthcare-Researcher-Connector Package: Federated Learning tool for bridging the gap between Healthcare providers and researchers

  federated-learningbioinformaticsgsoc-2020pygridpysyftopenmineddifferential-privacymultiparty-computationgtexcovid-19gsocgoogle-summer-of-code
  Language:Jupyter Notebook 17

• lovelyscientist / rna-seq-vae

  Variational Auto-Encoder that generates synthetic gene expression data

  gene-expressiongtexpytorchvae
  Language:Python 16

• kevinhu / cancer_data

  A unified downloader+preprocessor for cancer genomics datasets

  cancer-researchcancer-genomicstcgacclegtexgenomicsdata-sciencedatasethdf5-format
  Language:Python 14

• tjiagoM / gtex-transcriptome-modelling

  Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits

  papergtextranscriptometcgaukbiobankmultilayer-networkvaepythonumaptwas
  Language:Jupyter Notebook 10

• soedinglab / tejaas

  Tejaas - a tool for discovering trans-eQTLs

  trans-eqtlgene-expressionreverse-regressioneqtleqtl-mappinggtex
  Language:C 9

• nanxstats / grex

  Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data

  bioinformaticsgtexgenotype-tissue-expressiongene-expression
  Language:R 8

• KarakulakTulay / gtex-tcga-data-download

  Describes how to download RNA-Seq controlled data from GTEx via sra-toolkit and from TCGA via GDC Data Transfer Tool

  gtextcgagtex-sra-toolkittcga-gdc-data-transfer
  4

• Kuanhao-Chao / Transcript_Quantifier_Assessment

  🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.

  assemblygtexread-simulationrna-seqtranscript-assemblytranscript-noisetranscript-quantificationtranscriptomics
  Language:Shell 4

• urmi-21 / TCGA-Data-Analysis

  Examples on processing and working with TCGA mutation and RNA-Seq data

  tcga-datagtexcancer-datatcgabiolinksbioinformatics-analysis
  Language:R 4

• xuwenjian85 / B-GEX

  Blood-based multi-tissue gene expression inference with Bayesian regression

  gtexinference-modelsbloodrna-seq
  Language:Jupyter Notebook 4

• dhimmel / gtex

  GTEx Expression Analysis

  gtexrephetiogene-expression
  3

• hessJ / geneAnnotation

  Plot gene ontologies

  genomicsgene-ontologyplotgtexgene-expresssion
  Language:R 2

• nanxstats / exp2vec

  🧬 Tissue-specific gene embeddings trained on GTEx data

  embeddingsembedding-modelsglove-embeddingsgene-expressionmachine-learninggtex
  Language:R 2

• reagan0323 / MT-eQTL

  Multi-Tissue eQTL

  multi-tissue-eqtleqtlgtex
  Language:MATLAB 2

• thehyve / react-gtex-viz

  React components for visualisations from the GTEx web portal

  gtexreact
  Language:JavaScript 2

• DiseaseTranscriptomicsLab / voyAGEr

  ⏳ Online graphical interface to explore age-related gene expression alterations in 49 GTEx human tissues

  bioinformaticscomputational-biologygene-expressiongtexhumantranscriptomeweb-appageing
  Language:HTML 1

• greenelab / cimr

  tool for continuously integrated meta-resource

  continuous-integrationgwastwasgene-expressiongtex
  Language:Python 1

• IMS-Bio2Core-Facility / GTExQuery

  Multithreading, data handling, and file manipulation for the GTExSnake pipeline

  pythonmultithreadingdata-handlingrequestspandasgtex
  Language:Python 1

• rmgpanw / gtexr

  An R interface to the GTEx Portal API

  api-wrapperbioinformaticseqtlgtexrsqtl
  Language:R 1

• sigven / gtexRNA

  Gene expression retrieval with GTEx API

  gene-expressiongtex
  Language:R 1

• bpark-research / TCGA_Spark

  tcgagtexcancersparkbioinformatics
  Language:Jupyter Notebook 0

• danielsarj / GTEx-Sample-Classifier

  COMP479 - Machine Learning final project at Loyola University Chicago.

  gtexlogistic-regressionmachine-learning
  Language:Python 0

• greenelab / cimr-d

  client to the cimr-d database for continuous integration and analysis using cimr

  continuous-integrationgwaseqtltwasgtexdatabase
  Language:Shell 0

• hwittich / GTEx-Sample-Classifier

  COMP479 - Machine Learning final project at Loyola University Chicago.

  gtexlogistic-regressionmachine-learningpythonscikit-learnrna-seq
  Language:Python 0

• ebi-gene-expression-group / atlas-gtex-bulk

  Atlas analysis for controlled-access GTEx bulk datasets

  gtexrna-seq
  Language:Python

• jhrcook / tidy_GTEx

  The GTEx data in a tidy format for use in R

  gtexrtidytidyversegene-expressiontissue
  Language:R

• lcolladotor / recount-brain-bog19

  Poster for Biology of Genomes 2019 (#bog19) on recount-brain

  recount2recountbrainhumanpublicrnaseqreproducibilitysamplemetadatacuratedsragtextcgaposterbog19
  Language:HTML

• minesh1291 / isb-cgc-dash-prep

  tcgagtexpythonrsqlcloudbioinformaticscomputational-biologycancer-genomicscancer-genome-atlas

• zobaer53 / flutter_login_template

  Login template with Firebase GetX

  firebasefluttergtexpackagessharedpreferences
  Language:Dart