nuno-agostinho

psichomics

Interactive R package to quantify, analyse and visualise alternative splicing

cTRAP

Identification of candidate causal perturbations from differential gene expression data

phd-thesis

Developing Web Apps for Analyses of Transcriptomes

bio-cli

CLI tools for bioinformatics

VEP_plugins

Plugins for the Ensembl Variant Effect Predictor (VEP)

alternativeSplicingEvents

Alternative splicing annotation for AnnotationHub

floweRy

R package to manage Celery task queues via Flower's REST API

actions

GitHub Actions for the R community

AGAT

Another Gtf/Gff Analysis Toolkit

betAS

CAPICE-VEP-plugin-testing

Scripts to test CAPICE plugin in VEP

cdis-data-client

data access client

celery

Distributed Task Queue (development branch)

EBI-nextflow-config

EBI-wide Nextflow config file

ensembl-datacheck

Code for checking Ensembl databases during release production

ensembl-io

File parsing and writing code for Ensembl

ensembl-rest

Language agnostic RESTful data access to Ensembl data over HTTP

ensembl-variation

The Ensembl Variation Perl API and SQL schema

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

ensembl-webcode

The code to run an Ensembl website

ENSVAR-4310

Test VEP with new GTF/GFF3 annotation files

ENSVAR-4550

Benchmark impact of --regulatory on VEP annotation speed

galaxy_blast

Galaxy wrappers for NCBI BLAST+ and related BLAST tools.

gdc-client-docker

Docker to run GDC Data Transfer Tool (gdc-client)

nuno-agostinho

Config files for my GitHub profile.

policies

Basecamp policies, terms, and legal. Share them; reuse them; contribute to them.

poweR

Creates poweRful things

public-plugins

Plugins for an Ensembl website

sra-tools-docker

sra-tools docker with bash + procps

SUsPECT

Variant effect prediction based on custom long-read transcriptomes