Beast code in Giters

Junpeng Fan's repositories

KEGGTools

A collection of tools to download and process KEGG database

Language:PythonMIT28 1 3

DAGflow

Module to create DAG Task and Manage Task on SGE

Language:PythonMIT20 3 2

ontbc

Pipeline for oxford nanopore barcoding

Language:Python5 10

pySeqkit

Toolkit for processing sequences in FASTA/Q formats

Language:PythonMIT4 20

CSCC_heterogeneity

Language:Jupyter Notebook2 10

Python-and-Biology

Language:Python2 10

GridMARVEL

A tool for runnning MARVEL assembler on cluster

Language:PythonMIT1 10

MOCC

Language:Jupyter Notebook1 20

Singlecell_COVID19_persistent_infection

Language:Python1 20

anndata

Annotated data.

Language:PythonBSD-3-Clause010

BookScript

Language:Python010

FlyPythons.github.io

Language:Jupyter NotebookGPL-3.0010

BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

Language:PerlNOASSERTION010

ea-utils

Automatically exported from code.google.com/p/ea-utils

Language:C++010

ega-download-client

A basic Python-based EGA download client

Language:PythonApache-2.0000

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

Language:PythonAGPL-3.0010

hwget

Download data with HuaWei cloud

Language:Python020

LACHESIS

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

Language:C++NOASSERTION010

learning-python

020

NCBITools

Tools to processing NCBI databases

Language:PythonMIT010

pacbio_variant_caller

SMRT-SV: Structural variant and indel caller for PacBio reads

Language:PythonMIT010

redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Language:PerlGPL-2.0010

ViewGenome

A python module to view genome

Language:PythonMIT010