mschubert

clustermq

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

narray

R package for subset- and name-aware array utility functions

TCGAbiolinks-downloader

GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package

ebits

R bioinformatics toolkit incubator

cgas_ko

PKGBUILDs

Build scripts for the Archlinux User Repository

GRN-aneup-purity

Analysis code for "Gene networks in cancer are biased by aneuploidies and sample impurities"

overlay

Gentoo overlay for (mainly scientific) software that's not quite ready for the main tree

R-hpc

Aneufinder2

Find CNVs in single cell sequencing data.

boundie

R package for differential expression on count data with parameter bounds

clustermq-performance

Performance testing for https://github.com/mschubert/clustermq

cppzmq

Header-only C++ binding for libzmq

data

A data API for molecular biology

docker-actions-test

footprints

Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"

GENIE3

GENIE3 (GEne Network Inference with Ensemble of trees) R-package

gentoo_prefix_ci

A Gentoo Prefix continuous integration repo. Find precompiled Gentoo Prefix in the releases section

HoneyBADGER

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

mad2-transposon

Analysis code for "Cancer tolerance to chromosomal instability is driven by Stat1 inactivation in vivo"

mcp

Regression with Multiple Change Points

mschubert

mschubert.github.io

ProjecTILs

Interpretation of T cell states using reference single-cell atlases

rzmq

R package for ZMQ

sci

Gentoo Science Overlay

slurm

Cookiecutter for snakemake slurm profile

tigress

Trustful Inference of Gene REgulation using Stability Selection

ToxicGenes

VariantAnnotation

Annotation of Genetic Variants