BGI-FlexLab (BGI-flexlab)

BGI-FlexLab

BGI-flexlab

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BGI-FlexLab's repositories

SOAPnuke

A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files

Language:C++License:GPL-3.0Stargazers:97Issues:10Issues:40

SOAPTyping

HLA typing for Sanger Based Test

Language:C++License:GPL-3.0Stargazers:13Issues:4Issues:4
Language:JavaLicense:GPL-3.0Stargazers:9Issues:4Issues:0

DPGT

DPGT is a distributed population genetics analysis tool which enabled joint calling on millions of WGS(whole genome sequencing) samples.

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bamqc

BGI-lowpass bam quality control

Language:JavaStargazers:2Issues:4Issues:0

bwa-streaming

support hadoop streaming

Language:CLicense:GPL-3.0Stargazers:2Issues:4Issues:1

composer

Visual and code editor for Common Workflow Language

Language:TypeScriptLicense:Apache-2.0Stargazers:1Issues:2Issues:6

vcfstats

BGI-lowpass imputation vcf stats

Language:JavaStargazers:1Issues:4Issues:0

workflow-examples

cromwell workflow examples

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automation

用于自动生成WDL

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PVFD

Population variation frequency database.It's a sub-project of HVBase.

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cromwell

Workflow Execution Engine using WDL

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GaeaPipeline

A pipeline for rapid genome analysis and interpretation

Language:PythonStargazers:0Issues:4Issues:4

vcf-pl-merge

lowpass 合并bcftools和gatk结果

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