pdb-parser

There are 4 repositories under pdb-parser topic.

PDBRipper
horsicq / PDBRipper
PDBRipper is a utility for extract an information from PDB-files.
hacktoberfest hacktoberfest2023 pdb pdb-files pdb-parser reverse-engineering
Language:C 775
HoShiMin / formatPE
A bunch of parsers for PE and PDB formats in C++
cpp header-only modern-cpp pdb pdb-files pdb-parser pdb-structure pe pe-analyzer pe-applications pe-file pe-format portable-executable pe-parser
Language:C++ 218
zouxianyu / query-pdb
query-pdb is a server-side software for parsing PDB files. The software provides PDB online parsing service.
modern-cpp pdb pdb-parser webserver
Language:C++ 132
douweschulte / pdbtbx
A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.
crystallography rust rust-crate pdb pdb-parser pdbx-files scientific atoms mmcif
Language:Rust 49
PACKMAN
Pranavkhade / PACKMAN
PACKMAN: PACKing and Motion ANalysis
protein alpha-shape protein-structure protein-hinge-prediction pdb-parser protein-domain-identification structural-bioinformatics structural-biology python
Language:Python 32
smx-smx / PDBSharp
Fast and cross-platform parser for Microsoft PDB files
microsoft pdb-files pdb-parser debug parser library csharp debug-symbols microsoft-pdb
Language:C# 30
BioHaskell / hPDB
PDB parser in Haskell
protein-structure protein-data-bank file-format pdb hackage pdb-parser haskell
Language:Haskell 20
a-r-j / CPDB
Cython implementation of PDB -> DataFrame parsing
bioinformatics deep-learning machine-learning pdb pdb-files pdb-parser protein protein-structure structural-biology
Language:Cython 19
richard-hgs / c-infinity-utilities
C++ Utilities, DLL for GUI, Layout Managers, PDB Symbol Parser, Input(Mouse double click in less than 100ms fix), Raw disk data writer, And much more.
microssoft-dia2-sdk regex pcre2 memory-leak-detection keyboard-events gui-library pdb-parser c-utilities memory-write
Language:C 7
MolDF
Ruibin-Liu / MolDF
Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.
bioinformatics pandas pdb-parser mmcif mol2 python atomselection
Language:Python 7
OmerRaviv / PdbBenchmarks
Benchmark for the most popular managed PDB readers.
pdb-files pdb-parser portable-pdb windows-pdb
Language:C# 6
LixiangZhao98 / ProteinVisualization
This is a Protein Visualization demo project built with Unity3D. It reads and visualizes .pdb files. The current visualizations includes space-filling, balls-and-sticks, licorice and backbone diagrams, and...the seamless transition between these diagrams. The repository is keeping to update.
backbone ball-and-stick pdb pdb-parser protein space-filling unity3d visualization licorice seamless-transition
Language:C# 5
hamalcij / biotool
Bioinformatics Toolbox
bioinformatics api pdb-parser fasta-parser clustal protein dna multiple-sequence-alignment sequence-alignment sequence structure cplusplus-library
Language:C++ 1
Jaffar-Hussein / Python-PDB-Parser-and-Analysis
A Python-based parser and analysis tool for Protein Data Bank (PDB) files. The project aims to facilitate the manipulation of PDB files, enabling users to extract and compute various structural properties of proteins, such as counting amino acid residues and calculating distances between atoms.
jupyter-notebook matplotlib numpy pdb pdb-parser python3 seaborn
Language:Python 1
Krnds / ProjetPDB
Java command line tool for fetching, parsing and displaying in a Jmol window all interactions zones between proteins or molecular complexes
beginner-project java8 jmol pdb-files pdb-parser protein-protein-interaction protein-structure
Language:Java 1
Michal-Szczygiel / pdb_parser
Prosty parser plików .pdb napisany jako natywne rozszerzenie pythonowe.
pdb-parser python-extension
Language:Rust 1
Michal-Szczygiel / pdb_utility
Użyteczności związane z parsowaniem plików .pdb oraz zdalnym dostępem do baz danych Pfam i UniProt.
bioinformatics molecule pdb-parser pfam-annotation protein-structure uniprot
Language:Python 1
zwang123 / pdblib
A simple Python library to easily parse pdb files
pdb-parser
Language:Python 1
AndreaRubbi / pdb_parser
Python program that can identify the residues interacting between chains of a complex protein.
pdb pdb-files hemoglobin proteomics interactomics parser pdb-parser
Language:Python 0
c-feldmann / pdbpython
The scope of this module is downloading or reading PDB-Files and subsequently parsing them
pdb pdb-parser
Language:Python 0
oleander-twig / protein-databank-filtering
My summer practice at the HSE university
database pdb pdb-parser
Language:Jupyter Notebook 0
allbegray / pdb-parser-js
Utility to parse PDB(Protein Data Bank) file format 3.3 into JSON format
pdb pdb-parser protein-data-bank protein-structure bioinformatics
Language:TypeScript
Tejas1415 / PDB-Protein-Structure-Prediction
A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.
cnn-keras distance-matrix pdb pdb-database pdb-parser prediction-model proteins structures
Language:Python

pdb-parser

horsicq / PDBRipper

HoShiMin / formatPE

zouxianyu / query-pdb

douweschulte / pdbtbx

Pranavkhade / PACKMAN

smx-smx / PDBSharp

BioHaskell / hPDB

a-r-j / CPDB

richard-hgs / c-infinity-utilities

Ruibin-Liu / MolDF

OmerRaviv / PdbBenchmarks

LixiangZhao98 / ProteinVisualization

hamalcij / biotool

Jaffar-Hussein / Python-PDB-Parser-and-Analysis

Krnds / ProjetPDB

Michal-Szczygiel / pdb_parser

Michal-Szczygiel / pdb_utility

zwang123 / pdblib

AndreaRubbi / pdb_parser

c-feldmann / pdbpython

oleander-twig / protein-databank-filtering

allbegray / pdb-parser-js

Tejas1415 / PDB-Protein-Structure-Prediction