mmagnus

Pocket-Plus-Calibre-Plugin

📚 Modified version of the Calibre plugin for Pocket. Now, you get your articles organized by your Pocket tags, and more!

rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

geekbook

G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-based notes

pubmex

get full paper names for downloaded publications automatically

EvoClustRNA

RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io

emacs-pdb-mode

pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.

awesome-rna-3D-tools

awesome tools for RNA

EmacsOrgModeClockingXBar

see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives

RNA-Structural-Bioinformatics-Crash-Course

RNA Structural Bioinformatics Crash Course & Data Science in Python

RNA-Puzzles-Standardized-Submissions

Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip

emacs-env

I've been using Emacs for over 17 (since 2007) years now. This's my config file :-) it might be useful for someone. http://mmagnus.github.io/emacs-env/

borg-search

Tools search borg archives/repos (also to search big files to remove them)

orgmode-capture-all

Capture ALL (with a right click) to OrgMode Inbox

PyMOL4Spliceosome

Structures of the spliceosome processed to be easily viewed with PyMOL

yeast-spotifier

spotifier - a script to process yeast plate images into figures, without fancy Deep Learning ;-) (yet)

boox-wifi-mount-sync

boox-wifi-mount-sync - sync or mount your Boox device over WiFi

PocketX-Calibre-Plugin

PocketX-Calibre-Plugin is an experimental version of Pocket-Plus-Calibre-Plugin (send articles from Pocket to your e-reader)

rna3db

A dataset for training and benchmarking deep learning models for RNA structure prediction

samochodoza

biopython

Official git repository for Biopython (originally converted from CVS)

emacs-orgmode-tracking

fmalmeida

gnome-shell-simple-message

Write message on top bar with dconf

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

mmagnus

mmagnus.github.io

https://mmagnus.github.io

notes

OpenComplex

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

PyMOL4Ribosome

PyMOL4Ribosome

RNA-Puzzles-toolkit-overview

RNA-Puzzles-toolkit-overview