ddiez

singleCellHaystack-py

Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

celltype

An R package for cell type prediction from single cell omics data

scmisc

Miscellaneous tools for single cell analysis

mafft

Dockerfile for MAFFT multiple sequence alignment tool

vdjmisc

Miscellaneus Tools for The Analysis of Immune Repertoires

scmisc-py

Miscelaneous tools for the analysis of single cell genomics data.

bdrhapsody

CanekDebug

d10misc

ddiez.github.io

Source for the home page at github.io

destiny

R package for single cell and other data analysis using diffusion maps

foo

Example repo for testing pkgdown

foo-py

Test

hmmer

Dockerfile for HMMER

maze

A Simple Maze Plotting Tool

meme

Dockerfile for MEME suite

motiftools

Tools for the analysis of motifs

omisc

Miscellaneous tools for omics analysis

q3tools

Custom functions for the analysis of omics data

rdcq

A package implementing methods for the estimation of cell abundaces from omics data

samtools

Dockerfile for samtools

scanpy

Single-cell analysis in Python. Scales to >1M cells.

seurat

R toolkit for single cell genomics

seurat-object

shinycluster

single-cell-best-practices

https://www.sc-best-practices.org

sphinx-tests

Test documentation deployment.

trntools

umitools

Docker file for umi_tools.