clip-seq

There are 0 repository under clip-seq topic.

Xinglab / CLAM
CLIP-seq Analysis of Multi-mapped reads
clip-seq rip-seq expectation-maximization eclip iclip peak peak-caller
Language:Python 26
nf-core / clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
clip clip-seq nextflow nf-core peak-calling pipeline rna-rbp-interactions workflow
Language:Nextflow 16
datirium / workflows
CWL based Bioinformatics Workflows
biowardrobe cwl workflow epigenetics bioinformatics bioinformatics-pipeline bioinformatics-analysis chip-seq rna-seq clip-seq atac-seq
Language:Common Workflow Language 14
fchen365 / surf
The statistical utility for RBP functions (SURF)
package rna-seq clip-seq integrative-analysis surf differential-analysis alternative-splicing
Language:R 2
simras / CLAP
CLAP - A pipeline used to process CLIP-seq (specifically PAR-CLIP, HITS-CLIP and iCLIP) data.
bioinformatics-pipeline ngstools clip-seq par-clip iclip hits-clip
Language:Perl 2
slebedeva / CLIP_mapping
a pipeline to map CLIP-seq data
clip-seq next-generation-sequencing
Language:Python 2
BackofenLab / CLIPcontext
Extract CLIP-seq binding regions with both genomic and transcript context
clip-seq
Language:Python
SoniaRuiz / RBP_RNA_interactions
Shiny App for the visualisation of RBP-RNA interactions supported by the binding sites of RBPs derived from CLIP-seq data (ENCORI database).
clip-seq ggplot rbp shinyapp rbp-rna
Language:R
y9c / PIPE-CLIP
Optimized version of PIPE-CLIP tool (bug fixed)
clip-seq rip-seq rna
Language:Python

clip-seq

Xinglab / CLAM

nf-core / clipseq

datirium / workflows

fchen365 / surf

simras / CLAP

slebedeva / CLIP_mapping

BackofenLab / CLIPcontext

SoniaRuiz / RBP_RNA_interactions

y9c / PIPE-CLIP