kpatel427

YouTubeTutorials

R-scripts

Miscellaneous R script to wrangle data and generate visualizations

multiome_analysis

Scripts for sincle cell multiome analysis

DE_analysis

Scripts to run differential expression analysis using DESeq2 package

training-modules

A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.

bash

useful bash one-liners and scripts

GEOquery-scripts

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

RShiny

Working example scripts to implement small tricks in Shiny app

chipseq-snakemake

snakelike workflow for chipseq

CNVkit_scripts

deconvolute_RNAseq

scripts that uses tools to deconvolute immune cells types from bulk RNA-Seq data

RNASeq

RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

scRNAseq

2021_datathon

Public repository for the R-Ladies Philly & JAT datathon on "Exploring judicial patterns in Philadelphia courts"

advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

ATRX_coverage_plot

create-pptc-pdx-corplots

kpatel427

kpatel427.github.io

kpatel427.github.io_backup

learningD3js

machineLearning

MYCN-methods-paper

project-template

CHOP project template

Python_Perl_scripts

README_template

responsive-website

shiny_module

Learning about Shiny Modules

SurvivalAnalysis_KaplanMeier

Generating Kaplan Meier plots using gene expression data