bisulfite

There are 0 repository under bisulfite topic.

• dpryan79 / MethylDackel

  A (mostly) universal methylation extractor for BS-seq experiments.

  methylationbioinformaticsmethylation-extractionbisulfite
  Language:C 172

• khuang28jhu / bs3

  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

  ngstoolsbisulfitepython-2alignmentmethylation-rate-calculation
  Language:Python 27

• tadKeys / tabsat

  Targeted Amplicon Bisulfite Sequencing Analysis Tool

  genomefastqdockerfilemethylationbisulfitebisulfite-sequencingtargeted-sequencing
  Language:Perl 11

• semenko / serpent-methylation-pipeline

  An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.

  bsseqmethylationpipelinesnakemakeemseqbisulfitebs-seqem-seqepigenetics
  Language:Python 8

• sing-group / bicycle

  bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis

  javajava-bioinformaticsmethylationbisulfite-sequencingbisulfitedna-methylationcli
  Language:Java 8

• andrewdavidsmith / transferase

  The transferase system for retrieving methylome data from methbase

  dna-methylationepigeneticsepigenomicsmethylomebisulfitebisulfite-sequencingmethyl-seqmethylationmethylation-analysiswgbs
  Language:C++ 3

• BioInfoTools / BSVF

  Bisulfite Sequencing Virus integration Finder

  bisulfitevirus-integration
  Language:C 3
• CytoMeth

  mdraminski / CytoMeth

  CytoMeth tool compiles a set of open source software named in the Roche pipeline guidelines to perform SeqCap Epi data analysis.

  methylationepigeneticsbisulfitengscpgcpg-islandsngs-pipelinerscriptcytometh-installationcytometh-processing
  Language:R 3