The Jackson Laboratory's repositories
cs-nf-pipelines
The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines
zarrdataset
A dataset for loading zarr files to be used in machine learning training pipelines
dask_relabeling
A relabeling tool for tiled segmentation with Dask
jax-omeroutils
A module and scripts for working with OMERO
geneweaver-docs
Documentation site for the Geneweaver project.
geneweaver-client
A client library for the integration and analysis of heterogeneous functional genomics data.
scbl-utils
A set of command-line utilities that facilitates data processing in the Single Cell Biology Lab at the Jackson Laboratory.
geneweaver-core
The core library for GeneWeaver projects.
geneweaver-db
The GeneWeaver database interaction code.
dti_motion
software for detection and removal of motion frames in DTI MRI scans
geneweaver-aon
Ortholog/homolog mapping for Geneweaver
geneweaver-api
A system for the integration and analysis of heterogeneous functional genomics data.
ontology-service
A generic ontology term microservice
activelearning
Active learning tools for fine-tuning ML models
cancer-cube-st-pilot-ffpe-ff
Pilot Visium 10X experiment comparing FFPE and fresh frozen protocols
DccXmlGenerator
This is the Python version of the DCC XML file generator.
Galaxy_Tools_CBA
This is the Python and config files for the CBA tools deployed in Galaxy
intro-napari-slides
Introductory slideshow to napari
intro-napari-workshop
Intro to napari Workshop