arkitektio-apps

gucker

gucker is a simple gui app to watch folders and stream them to a connected arkitekt instance

segmentor

stardist enabled as an arkitekt plugin

.github

arkitektio-imswitch

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

kare

CARE denoising enabled as an arkitekt plugin

mikro-manager

a standalone wrapper for Micro-Manager enabling features on arkitekt

mikro-napari

napari within the mikro environment

mikroj

Fiji/ImageJ with mikro

omero

conversion of bioformats compliant data to mikro data

omero-bridge

a bridge to convert OMERO data to mikro

reaktor

a distributed workflow scheduler for the arkitekt framework (plugin)

stdlib

the standard library for arkitekt implementing some basic image processing algorithms