biorxiv

There are 0 repository under biorxiv topic.

• jonatasgrosman / findpapers

  Findpapers: A tool for helping researchers who are looking for related works

  scopusieeearxivacmpubmedscrapercrawlerpaperacademicresearchpapersbibtexacademic-publishingscientific-publicationsscientific-papersscientific-publishingbiorxivmedrxivsystematic-reviewsystematic-mapping
  Language:Python 187

• jannisborn / paperscraper

  Tools to scrape publication metadata from pubmed, arxiv, medrxiv and chemrxiv.

  medrxivarxivpubmedbiorxivchemrxivpaperscraper
  Language:Python 166

• LieberInstitute / HumanPilot

  Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

  spatial-transcriptomicsrstats10xgenomicsvisiumdlpfchumanbrainanalysisbiorxiv
  Language:HTML 63

• quantixed / manuscript-templates

  LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.

  biorxivtypesettingjournalpreprint
  Language:TeX 52
• medrxivr

  ropensci / medrxivr

  Access and search medRxiv and bioRxiv preprint data

  evidence-synthesissystematic-reviewsbibliographic-databaserstatsr-packagerpreprint-recordsmedrxiv-databiorxivpeer-reviewed
  Language:R 45

• Imamachi-n / BioRxivCurator

  Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.

  altmetrics-databiorxivpubmedraspberry-pislackslack-bottwitter-bot
  Language:Python 11

• jacquerie / biorxiv-cli

  A Python wrapper for the bioRxiv API.

  biorxivcli
  Language:Python 9

• Quiltomics / godseye

  Monitor biomedical trends visually across ALL of PubMed + bioRxiv

  pythonpubmedbiorxivvisualizationbioinformaticscomputational-biologytext-mining
  Language:Python 9

• dhimmel / biorxiv-licenses

  The licensing of bioRxiv preprints

  biorxivpreprintslicensingcreative-commonspublishingsciencesatoshi-village
  Language:Jupyter Notebook 8

• TalSchuster / BiorxivRetriever

  Simple python retriever for Biorxiv articles

  apibiorxivrxivist
  Language:Python 7

• mgp13 / getwriting

  Clean, beautiful Latex template for academic articles

  arxivbiorxivformat-free-submissionslatexlatex-templatemedrxivoverleaf
  Language:TeX 5

• greenelab / annorxiver

  Annotating Rxiv preprints in an automated fashion

  machine-learningpublishingpreprintsbiorxivmedrxiv
  Language:Jupyter Notebook 4

• greenelab / greenblack

  Does green OA via preprinting reduce Sci-Hub usage?

  sci-hubbiorxivpreprintsunpaywalljournalspublicationpublishingdatasetnotebook
  Language:Jupyter Notebook 3

• LieberInstitute / marchionni_projects

  Collaboration with Luigi Marchionni (JHU) and RIKEN with recount2 data

  recountrecount2fantom6biorxivfantom5fantomlncrnarstats
  Language:Shell 3

• andrewgcodes / bio2csv

  scrape biorxiv in one line of code.

  bioinformaticsbiorxivsciencescrapingwebscraping
  Language:Python 2

• Huang-lab / GetFreeCopy

  Get Free Copy: A Multi-Repository Search Platform for Biomedical Publications

  arxivbiorxivmedrxivopen-sciencepublication
  Language:JavaScript 2

• junthbasnet / bioRxiv-COVID19-Sanity

  🦠😷 Organizes COVID-19 SARS-CoV-2 preprints from medRxiv(preprint server for the health sciences) and bioRxiv(preprint server for biology) and uses Exemplar SVM to show similar results.

  covid-19biorxivmedrxivexemplar-svm
  Language:Python 2

• SingularityLabs-ai / bard-scientific-publications-extension

  Google's Bard Scientific Publications Extension (supports: arxiv, biorxiv, pubmed, ieeexplore, Sciencedirect, ACM, Nature, Cell)

  acmarxivbiorxivieeexplorenaturepubmedsciencedirect
  Language:TypeScript 2

• urmi-21 / COVID-biorxiv

  Flexible query for biorxiv and medRxiv COVID-19 collection

  covid-19medrxivbiorxivsars-cov-2coronavirus
  Language:Python 2

• choderalab / AurA-materials

  Code and data for AurA simulations

  aurorasimulated-datamolecular-dynamicskinaseaurora-kinasebiorxivsimulation-data-analyzedmskccumnbiophysicsstructural-biologycomputational-biologycomputational-chemistryelifechemical-biology
  Language:Jupyter Notebook 1

• greenelab / annorxiver_manuscript

  This manuscript covers the annorxiver project.

  manuscriptmanubotpublishingpreprintsbiorxivmedrxivopen-science
  Language:HTML 1

• greenelab / preprint-bot

  Twitter bot that tweets preprints and comments from BioRxiv and MedRxiv

  twitterbotbiorxivpreprintmedrxiv
  Language:JavaScript 1

• BioGRID / BioGRID-BioRxiv-Fetcher

  A simple script to download publication annotation from BioRxiv

  apibiorxivpython3sql
  Language:Python

• BioGRID / Coronavirus-Biorxiv-Triage

  A simple script to take the Biorxiv Coronavirus Collection and Triage it for interaction terms

  covid19covid-19sars-cov-2biorxivmedrxivbiogridcoronavirussars-covpython3
  Language:Python

• dilawar / SinghAndBhalla_CaMKII_SubunitExchange_2018

  Subunit exchange enhances information retention by CaMKII in dendritic spines

  simulationresearch-paperresearch-projectbiorxivcamkiisubunit-exchangebiological-memorytexpython
  Language:TeX

• EvdH0 / ODity-growth-E-coli

  This is the full data analysis accompanying the pre-print 'Quantifying live bacterial densities using non-invasive optical measurements of E. coli' on bioRxiv.

  biorxive-coligrowth-rategrowth-ratesmicrobiology
  Language:Jupyter Notebook

• jibanCat / neuroscience-biorxiv-topics

  extracting general topics in biorxiv neuroscience collection, based on Rxivist. It would be a comparison to https://github.com/jibanCat/astro-ph-ml-topics

  ngramsbiorxivneuroscience
  Language:Python

• OldBonhart / EDA-NLP-PubMed-and-bioRxiv

  Rapid analysis of scientific papers from bioRxiv and PubMed

  biorxivpubmedpubmed-parsert-sneword2vecdata-visualizationdata-analysisnlpelectroactive-polymersschizophreniarasspberry-piconnectome-mappingconnectome2019-ncov-data-vis2019-ncov
  Language:Jupyter Notebook