Gao Lab

GLUE

Graph-linked unified embedding for single-cell multi-omics data integration

Guideline-for-Computational-Biology-and-Bioinformatics

Cell_BLAST

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

SLAT

Spatial-Linked Alignment Tool

CPC2_standalone

Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

ePooling

Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding

vConv

An implementation of vConv layer.

kernel-to-PWM

LOST_and_FOUND

RiboCalc

RiboCalc data and script

HERE

Human Embryonic RNA Editome

Markonv_figures

Markonv: a novel convolutional layer for identifying inter-positional correlations effectively and efficiently This is the repository for reproducing figures and tables in the paper.

scRNAseq_Benchmark

Bench-marking classification tools for scRNA-seq data

Cell_BLAST-notebooks

Jupyter notebooks for Cell BLAST

Markonv

core code of Markonv layer and Markonv operator

SLE-ImmuneAtlas

scRNA and scVDJ analysis for SLE samples

CARMEN

The Standalone package of CARMEN

FunTFBS

A package to identify functional TFBS

SEERS

SVEN

Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model

vConv-Figures_and_Tables

The repository for reproducing figures and tables in the vConv paper

COPE

Context-Oriented Predictor for variant Effects

GLUE-bioconda-recipes

Conda recipes of GLUE for the bioconda channel.

ProjectManagementWorkshop

This is a demo repo for project management in Technology Workshop 2023

REVA-Data_Source_Code

sgRNA

A pipeline for sgRNA design

SPARKLE