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Anthony (acesnik)

acesnik

Geek Repo

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Company:Stanford University

Location:Stanford, CA, USA

Home Page:https://acesnik.github.io/

Twitter:@AnthonyCesnik

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Organizations
CellProfiling

Anthony's repositories

LncRNADiscovery

Snakemake pipeline for lncRNA discovery and quantification

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acesnik.github.io

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admin-requests

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bioconda-recipes

Conda recipes for the bioconda channel.

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codex-chat-notebook

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DESetupAndAnnotation

Scripts for setting up differential expression analysis and annotating from gene models and uniprot

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dotnet-feedstock

A conda-smithy repository for dotnet.

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dotnet-interactive-feedstock

A conda-smithy repository for dotnet-interactive.

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FlashIBAQ

Rough exploration of iBAQ with mzLib

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FragPipe

A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

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MetaMorpheus

Fork of the Morpheus Software

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metamorpheus-feedstock

A conda-smithy repository for metamorpheus.

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MSVisualization

Trying out ChatGPT-generated script for MS visualization

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mzLib

Library for mass spectrometry projects

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mzlib-interactive

Interacting with mzLib proteomics library using dotnet-interactive in visual studio code

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plaac

Prion-Like Amino Acid Composition

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Proteogenomics

C# implementation of classes and functions for proteogenomics

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proteomegenerator

Proteome Generator

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PyQtHelloWorld

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qupath-feedstock

A conda-smithy repository for qupath.

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sage

Proteomics search & quantification so fast that it feels like magic

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sdk

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SE

SE PSM assignment software

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SingleCellProteogenomics

Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model

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SingleCellProteomicsTutorial

Tutorial for analyzing single-cell imaging proteomic data

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snakemake-genewalk

Conda environment and snakemake script for genewalk runs in parallel

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SnpEff

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Spritz

Software for creating sample-specific proteoform databases from genomic data

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SpritzSnake

Merged into Spritz. See:

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staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

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