Kranti Konganti's repositories
Perl-for-Bioinformatics
An attempt to help anyone interested in using Perl for Bioinformatics
SBEToolbox
SBEToolbox (Systems Biology and Evolution Toolbox) is developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network.
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
bettercallsal
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
SqueezeMeta
A complete pipeline for metagenomic analysis
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
bioconda-recipes
Conda recipes for the bioconda channel.
fish-peco
peco select functions for fish shell
McGregor-Genomics
Phasing and Genotyping McGregor Population.
BURST
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
cronology
cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and traceback based on NCBI Pathogen Detection Project for Cronobacter.
crotrait
A portable tool for in silico species identification, serotyping and multilocus sequence typing of Cronobacter genus
DOQTL
QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)
galaxy-hub
Galaxy Community Hub
Rocket.Chat.Integrations
Rocket.Chat Integrations
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities