circrnas

There are 0 repository under circrnas topic.

• iprada / Circle-Map

  A method for circular DNA detection based on probabilistic mapping of ultrashort reads

  eccdnaecdnagenotypingngsstructural-variationcircular-dnacircrnacircrna-predictioncircrnasmicrodna
  Language:Python 60

• egaffo / CirComPara

  :microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

  bioinformatics-pipelinebioinformaticsrna-seqcircrnarna-seq-datarna-seq-analysisrna-seq-pipelinegene-expressioncircrnascircular-rnatranscriptomicscircseq
  Language:R 14

• haichengyi / bioseq2vec

  BioSeq2vec: learning deep representation of biological sequences using LSTM Encoder-Decoder

  biological-sequencesrepresentation-learningsequence-to-sequencelstmencoder-decoderrna-sequenceprotein-sequencencrna-protein-interactionslncrnamirnacircrnas
  Language:Python 4

• Frenzchen / circRNA_paperScripts

  Repository for the publication "Circular RNA repertoires are associated with evolutionarily young transposable elements" (Gruhl et al 2021. eLife).

  circrnasevolutionbioinformatics
  Language:R 3

• egaffo / circompara-docker

  :whale: Docker image for CirComPara

  bioinformaticsbioinformatics-pipelinebioinformatics-analysisrna-seq-analysiscircrnacircrnasgene-expressionrna-seq-pipelinecircular-rna
  Language:Dockerfile 2

• ShaominYang / SARS-CoV-2-SARS-CoV-and-MERS-CoV-encode-circular-RNAs-of-spliceosome-independent-origin

  Bioinformatic identification and quantification of circRNAs encoded by SARS-CoV-2

  sars-cov-2circrnassars-covcovid-19mers-cov
  2

• jakobilab / bioinfo-scripts

  Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder

  circularrnacircrnasslurmslurm-workload-managerbioinformaticsbioinformatics-scripts
  Language:Shell 1
• CircFusion

  annadalmolin / CircFusion

  CircFusion is a new software tool to detect linear fusions and f-circRNAs from RNA-seq data, both in samples where the fusion breakpoint is known and in a discovery mode. CircFusion can detect chimeric transcripts even in the presence of multiple translocation breakpoints, both for the main and unbalanced reciprocal fusion, which are quite common in malignant cells. The CircFusion output includes the list of the f-circRNAs and linear RNAs identified for each translocation, and overall for each sample, and other details about the read alignment.

  bioinformatics-toolcircrnasfusionspredictions
  Language:Shell 0

• Tammimies-Lab / circRNA_neuro

  Manuscript data and code repository

  circrnasdifferential-expressionintronsneuronalvariant-analysis
  0