xjtu-omics

SVision

Detecting genome structural variants with deep learning in single molecule sequencing

msisensor-pro

Microsatellite Instability (MSI) detection using high-throughput sequencing data.

HiCAT

HiCAT new project

msisensor-rna

MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data

IAGS

STMiner

Build the relationship between SVGs

Mako

A graph-based pattern growth approach for CSV discovery

gCAnno

IAG

ChineseQuartetGenome

Genome assembly and variant benchmarks for Chinese Quartet

Papaver-Genomics

The genomic data for Papaver species

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

processDrimm

The input file generator for [IAGS](https://github.com/xjtu-omics/IAGS)

MCscanX2Band

ArabidopsisAssem

Arabidopsis thaliana high-quality genome assembly

HiCAT-human

HiCAT-human

LTR_Stream

D2

D2: Compute DNA Density and Distance to nuclear periphery.

2023-YuXu-Chromatin-accessibility-landscape-of-Papaver-somniferum_bak

2023, graduated student, YuXu's work

2023-YuXu-poppy_subgenome

2023, graduated student, YuXu's work about poppy subgenome

BSLtool

Build satellite library

cluster

instruction of Ye-Lab HPC

Cross_landscape_HOR_clustering

Init

Four_Papaver_HiFi

The analysis scripts used in four Papaver HiFi data analysis projects

GS_Image

GastricImages Recognition

HRD

change to TAI

IAGS_AUTO

The project is based on IAGS and automates processes

msisensor

microsatellite instability detection using tumor only or paired tumor-normal data

opium_poppy_isoseq

SARS-CoV-2_graph_genome