The Hyve (thehyve)

The Hyve

thehyve

Geek Repo

Open source bioinformatics & translational research service company

Location:Utrecht, Netherlands

Home Page:https://thehyve.nl

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The Hyve's repositories

glowing-bear

:bear: The open source cohort selection and analysis interface

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sas-convert

Simple SAS7BDAT to CSV conversion tool based on the Parso library.

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fairspace

Fairspace provides a secure environment for managing research data.

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cbioportal

cBioPortal topic branches at The Hyve

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pmc-conversion

Data extraction, transformation and loading pipeline for the Princess Maxima Center

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whereabouts

Data warehouse Inventory Management System

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amazing-planning-generator

Sharks gotta swim. Bats gotta fly. And I'll need a weekly planning till I die.

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biocypher

A unifying framework for biomedical research knowledge graphs

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biocypher-cbioportal

a cBioPortal adapter for the BioCypher framework

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fairspace-jupyter

Code for connecting JupyterHub to Fairspace

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OHDSI-WebAPI

[Under development] OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

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fairspace-keycloak

Helm chart for installing Keycloak for Fairspace

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OHDSI-WhiteRabbit

WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

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caciocavallo

headless Swing UI testing

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cbioportal-frontend

React Frontend of cBioPortal :tada:

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CdmOnboardingETL

R Package to support the onboarding process of new CDMs in the DARWIN EU Data Network

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fairspace-build-scripts

A set of build scripts used in all Fairspace repositories

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genetics-colocalisation

Colocalisation pipeline for Open Targets Genetics

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genetics-finemapping

Fine-mapping pipeline for Open Targets Genetics

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genetics-sumstat-data

Workflows for processing summary statistics files for Open Targets Genetics

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gentropy

Open Targets python framework for post-GWAS analysis

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OHDSI-Usagi

Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.

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omop-cdm

SQLAlchemy definition of the OMOP CDM

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password-encoder

Simple command line password encoder tool

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platform-api

GraphQL and Rest API rewrite of the current Open Targets platform API

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radar-data-dashboard-backend

RADAR-base Data Dashboard backend

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single-cell-explorer

Hosted version of cellxgene

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