cytometry-analysis-pipeline
There are 1 repository under cytometry-analysis-pipeline topic.
- Language:Python 39
- Language:R 16
- SCIP
ScalableCytometryImageProcessing / SCIP
Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
Language:Python 7 luglilab / Cytophenograph
Pipeline for flow cytometry anlaysis
Language:Python 5sydneycytometry / CAPX
Cytometry analysis pipeline for large and complex datasets (CAPX) (beta)
Language:R 4- Language:R 3
elijahedmondson / High-Dimensional-Cytometry
R scripts to use various flow cytometry analyses
Language:R 2PaulRegnier / PICAFlow
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
Language:R 1GiulioPr / Generational_multiplex_analysis
Pipeline for the analysis of single-cell familial data from multiplex clonal assay
Language:Jupyter Notebook 0rohitfarmer / ColabHDStIM
Google Colab interface to HDStIM (High Dimensional Stimulation Immune Mapping)
Language:Jupyter Notebook 0aligogon / Cytometry-Biotechvana
Cytometry Biotechvana is a prototype of a Shiny application that allows an interactive workflow for flow cytometry data analysis.
Language:RMapleBKL / cytometry-autogating
Autogating for gate 1 and gate 2 with U-Net.
Language:Python
