whitews

FlowKit

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

FlowIO

A Python library for reading and writing Flow Cytometry Standard (FCS) files

pycharm-inspection-suppression-list

List of text strings for suppressing inspections in PyCharm

FlowUtils

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.

ReFlow

Django-based Repository for Flow Cytometry Data

FlowVis

A collection of visualization examples for Flow Cytometry Data

FlowStats

Mask_RCNN_TF2

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

ubuntu-on-dell-xps-9550

Setup instructions for installing Ubuntu on a Dell XPS 9550

ares-singularity

Singularity recipe for running the ARES neural network

CapsNet-Keras

A Keras implementation of CapsNet in NIPS2017 paper "Dynamic Routing Between Capsules". Now test error ＝ 0.34%.

CellCnn

Representation Learning for detection of phenotype-associated cell subsets

COMIX

Coarsened Mixtures of Hierarchical Skew Kernels

cv-color-features

Utility library of functions for the segmentation of color images

cv2-extras

Home for renegade lung map utils functions

CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing

dpmix

Python library for fitting massive mixture models using DP priors and GPU computation.

flonomaly

Utility for detecting anomalies within flow cytometry data (FCS files)

flow_rate_qc

Filter FCS files based on time anomalies

flowkit-extras

A collection of supplemental functions to the FlowKit library for flow cytometry analysis

FlowQC

A Python library for detecting anomalous events in flow cytometry data

Fretboard-Baby-Vue-Version

Fretboard app

ihc_classification_testing

Segmenting cells from lungmap images.

image-subregion-poly-extractor

Extract polygon sub-regions from an image

immport-api

Python library containing functions to work with the ImmPort API

KDEpy

Kernel Density Estimation in Python

lungmap-mrcnn-testing

multiplex-heatmap

A small GUI utility to generate heat map plots from multiplex CSV data

ReFlowRESTClient

REST client for interacting with a ReFlow Repository

scikit-learn

scikit-learn: machine learning in Python