cell-mechanics

There are 1 repository under cell-mechanics topic.

• rgerum / saenopy

  Semi-affine Elastic Network Optimizer to calculate forces in collagen or other biopolymer networks.

  finite-element-methodscollagenmodellingsolvercell-mechanics
  Language:Python 11

• AFM-analysis / PyJibe

  GUI for AFM data analysis with an emphasis on biological specimens

  atomic-force-microscopycell-mechanics
  Language:Python 9
• CompactionAnalyzer

  davidbhr / CompactionAnalyzer

  Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.

  biophysicsimagingcelltissue-analysismicroscopycontractilitycompactionfibercollagenorientationbioinformaticsimage-processingstructurefibrosiscell-mechanics
  Language:Python 7

• ZELLMECHANIK-DRESDEN / ShapeOut

  Shape-Out has been superseded by Shape-Out 2.

  cytometrycell-analysiscell-mechanicshigh-throughput
  Language:Python 5

• rg314 / pytraction

  Bayesian Traction Force Microscopy

  bayesian-methodstraction-force-microscopycell-mechanicsopencv-pythonbeadsbiophysics
  Language:Jupyter Notebook 3

• miguelatienza / onedcellsim

  biophysical-modelingcell-mechanicscell-migrationjuliapython
  Language:Python 1

• SaradhaVenkatachalapathy / Cell_Shape_Compressive_Force_MBoC_2018

  Analysis used in Damodaran et.al, Molecular Biology of the Cell , 2018

  cell-mechanicscell-shapechromatin-condensationrna-seq
  Language:R 1

• vi356761 / Machine-learning-model-for-cellular-stress-predictions

  Subroutines and functions written in MATLAB can predict stresses directly from phase images based on data trained from traction force and monolayer stress microscopy

  cell-mechanicsmachine-learning
  Language:MATLAB 0