Grisha Szep's repositories
BifurcationInference.jl
learning state-space targets in dynamical systems
FlowAtlas.jl
an interactive explorer for flow cytometry data
FlowWorkspace.jl
Load useful metadata from FlowJo workspace files such as gating strategies and sample groups
double-exclusive-reporter
Code supplementary for Grant P. et al. 2020. Interpretation of morphogen gradients by a bistable circuit
lamellipodium
Supplementary code Mueller, J. et al. 2017. Load Adaptation of Lamellipodial Actin Networks
hamiltonian-optimisation
Fitting Hamiltonian parameters to observed spectra
sound-detection
machine learning approaches to sound event detection in urban scenes and music
gszep.github.io
Personal website
anndata
Annotated data.
bitsandbytes
8-bit CUDA functions for PyTorch
buckling
Supplementary code for Caballero-Mancebo, S. et al. 2024. Friction forces determine cytoplasmic reorganization and shape changes of ascidian oocytes upon fertilization
DifferentialEquations.jl
Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components
field-theory
Field Theory Methods in Reaction-Diffusion Systems
HDF5.jl
Save and load data in the HDF5 file format from Julia
IGoR
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
molecular-dynamics
Assignment for non-equilibrium simulation methods
physarum
a slime mold simulation in JS and WebGL
reaction-diffusion
Interactive reaction-diffusion system simulator in two spatial dimensions
Recommendation.jl
Building recommender systems in Julia
sekom.com
sekom.com
squiggle
Learning representations of implicit space curves
SwinIR
SwinIR: Image Restoration Using Swin Transformer (official repository)
the-bewitching-bot
The most terrifying language model!