scipion-em's repositories
scipion-em
Base Scipion plugin defining objects and protocols for EM
scipion-em-tomo
Base tomography Scipion plugin with data model definition
scipion-app
Base Scipion application that is based on pyworkflow and all extension plugins
scipion-pyworkflow
Underlying pyworkflow module for the Scipion framework
scipion-em-prody
Scipion plugin for ProDy
scipion-em-relion
Plugin to use Relion SPA programs within the Scipion framework
scipion-installer
Scipion app installer for version 3. Compatible with python2 and python3. It creates virtualenv or conda environments.
scipion-em-aretomo
Plugin to use AreTomo within the Scipion framework
scipion-em-cryocare
Plugin to integrate cryoCARE: denoiser for tomography
scipion-em-cryosparc2
Plugin to use cryoSPARC2 programs within the Scipion framework
scipion-em-emantomo
Plugin to use Eman2 tomography programs within the Scipion framework
scipion-em-gautomatch
Plugin to use Gautomatch program within the Scipion framework
scipion-em-gctf
Plugin to use Gctf program within the Scipion framework
scipion-em-chimera
Plugin to use Chimera programs within the Scipion framework
scipion-em-cistem
Plugin to use cisTEM programs within the Scipion framework
scipion-em-empiar
A Scipion plugin to make depositions to EMPIAR
scipion-em-imod
Plugin to use some of the Tomography tools from IMOD in Scipion
scipion-em-motioncorr
Plugin to use Motioncor2 program within the Scipion framework
scipion-em-reliontomo
Plugin to use Relion tomography programs within the Scipion framework
scipion-em-resmap
Plugin to use Resmap programs within the Scipion framework
scipion-em-membrain
Plugin to run MemBrain software within Scipion
metadata-viewer
Generic metadata viewer
scipion-em-facilities
Plugin for Cryo-EM facilities to be used within Scipion framework
scipion-em-fsc3d
Plugin to use 3DFSC program within the Scipion framework
scipion-em-kiharalab
Utilities from Kihara Lab
scipion-em-sphire
Plugin to use Sphire programs within the Scipion framework
scipion-em-tomo3d
Plugin for the software of Jose Jesus Fernandez