ribosome
There are 0 repository under ribosome topic.
- ribotricer
smithlabcode / ribotricer
A tool for accurately detecting actively translating ORFs from Ribo-seq data
Language:Python 29 ribosomeprofiling / riboflow
Pipeline for Ribosome Profiling Data
Language:Groovy 14XPRESSyourself / XPRESSpipe
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
Language:Python 12RibosomeCRCL / rRMSAnalyzer
A set of easy-to-use functions to analyze end read count data of RiboMethSeq (RNA 2'Ome)
Language:R 9vikramparalkar / rDNA-Mapping-Genomes
Human and mouse genome assemblies customized for rDNA mapping
- Language:Python 6
Nextflow pipeline dedicated to RiboMethSeq data processing
Language:Nextflow 6- fivepseq
lilit-nersisyan / fivepseq
An application for analysis of 5′ endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5′ monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike.The main workflow of fivepseq is intended for downstream analysis of alignment files to describe the distribution of 5′ endpoints of reads relative to translation start and stop sites, as well as relative to amino acids or codons. It also computes frame preference of 5′ endpoint distribution and captures periodicity patterns.
Language:Python 5 cgob / codonDT_snakemake
Ribo-DT is a snakemake pipeline to infer single-codon and codon-pair dwell times as well as gene flux from ribosome profiling data using generalized linear model (GLM) with negative binomial noise model (Gobet et al., PNAS, 2020).
Language:R 4noepozzan / small-peptide-pipeline
Pipeline for small peptide discovery
Language:Nextflow 3- Language:Haskell 3
celalp / ribofootprintR
Fast data processing for ribosome footpring profiling experiments from bam files
Language:R 2xueliang4906 / polysome_detect
MATLAB scripts to analyze polysomes formed by ribosomes based on their coordinates and rotations.
Language:MATLAB 2lcscs12345 / riboss
Comparison of the ability of open reading frames to recruit ribosomes within individual transcripts
Language:Python 0- riboxyzLanguage:C 0
Tushar98644 / Ribo-Replicator
Generation and visualization of 3d protein sequences
Language:TypeScript 0- Language:R
JesseTG / ribosome-sublime
Sublime Text plugin for the Ribosome code generator
joaomota59 / bioInformatica
Programas usados em BioInformática
Language:Jupyter Notebook
