Lorenzo Gaifas (brisvag)

brisvag

Geek Repo

Company:@gutsche-lab

Twitter:@brisvag

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Lorenzo Gaifas's repositories

blik

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

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stemia

Scripts and Tools for Electron Microscopy Image Analysis.

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starfile.vim

VIM syntax for STAR/CIF files.

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waretomo

Overengineered batch processing script for tomography data with Warp and aretomo.

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stir

Wrapper for a collection of tools to visualize Martini coarse-grained trajectories in PyMOL

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cellcanvas

A tool to support interactive machine learning for cryoET data

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cryohub

IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.

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cryotypes

A super-simple data structure for particle poses from cryo-ET software

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lui

Lemmy TUI.

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morphosamplers

A library for sampling image data along morphological objects such as splines and surfaces.

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napari

napari: a fast, interactive, multi-dimensional image viewer for python

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napari-animation

A napari plugin for making animations

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napari-cellular-automata

napari-cellular-automata

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napari-svg

A plugin for writing svg files from napari

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ohmyzsh

🙃 A delightful community-driven (with 2,100+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

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pyem

Python programs for electron microscopy

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pyrepo-cookiecutter

personal repo bootstrap

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rich

Rich is a Python library for rich text and beautiful formatting in the terminal.

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scipion-em-blik

Plugin to use Blik program within the Scipion framework

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starfile

relion STAR files as pandas DataFrames

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surforama

a tool for using surfaces to explore volumetric data in napari

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textual

Textual is a Rapid Application Development framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and (coming soon) a web browser!

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vispy

Main repository for Vispy

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