Cristal Villalba's repositories
fantastic_databases_and_where_to_find_them
Repository of databases for omic data
ruichenlabcodes
Single cell ATAC and RNA seq data analysis
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
balaio-de-scripts
Here we found a lot of codes XD
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
dropkick
Automated cell filtering for single-cell RNA sequencing data
gr8monk3ys
The following is the Readme that is presented in the front of my profile
GSVA
Gene set variation analysis
optic-nerve_atlas
Codes and figures from single cell optic nerve atlas
OSCA
The package wrapping the book, for deployment via the Bioconductor build system.
potencia-feminina-git-e-github
repositorio do curso ministrado para o projeto potencia feminina
ruichenlabcodes-signac
R toolkit for the analysis of single-cell chromatin data
scanpy
Single-cell analysis in Python. Scales to >1M cells.
sicelore
Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
single-cell-best-practices
This project is work in progress! https://www.sc-best-practices.org
spatialdata-plot
Static plotting for spatialdata
STAR
RNA-seq aligner