The cellranger vdj pipeline can be used to analyze sequencing data produced from Chromium Single Cell 5′ V(D)J libraries.
nohup run_cellranger_vdj.sh &> out.vdj&
If you have single cell gene expression (GEX) libraries and V(D)J libraries from the same sample, the cellranger multi pipeline improves cell calls in the V(D)J dataset by discarding any cells that were not also called in the corresponding 5' gene expression dataset (recommended).
nohup run_cellranger_multi.sh &> out.multi&