mehdiborji

nanoranger

simplified cellranger for long-read data

align_unmapped

Quantification of unmapped (viral, microbial) reads obtained from high-throughput barcoded libraries such as 10x Genomics

methylation

slide-recon

AML_DLI

single-cell data analysis using python

BayesMadeSimple

Code for a tutorial on Bayesian Statistics by Allen Downey.

bypass-paywalls-chrome

Bypass Paywalls web browser extension for Chrome and Firefox.

EM-CNN

Deep learning pipeline for classification of histopathology images

fastq_tools

A multi-language benchmarking project to explore limits of languages vs disk I/O

git-scm.com

The git-scm.com website. Note that this repository is only for the website; issues with git itself should go to https://git-scm.com/community.

ims-to-tif-converter

Converts Fusion IMS files to TIF files

knn-smoothing

K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data

library

Reference V, D, J, C genes

LR_colocalization

Permutation testing on ligand-receptor coexpression on spatial data

pychopper

A tool to identify, orient, trim and rescue full length cDNA reads

scDNA_RNA

slide-annotation

ultima_nextflow

ultima_tools

pyexample

A exampe Python repository for scientific software

RCTD

rust-fundamentals

Rust Bootcamp Week 2: Rust fundamentals

telescope

Quantification of transposable element expression using RNA-seq