Karolis's repositories
pblast-heuristic-algorithm
This repository contains my implementation, that I built from scratch, of the heuristic blast algorithm used for DNA or protein sequence search against a massive database.
imagej-plugin
This is a Java plugin for the ImageJ image processing program.
pdb-archive-filter
This script enables users to filter through PDB archive in order to obtain simple data from each file.
protein-language-models
This repository contains python scripts that were used to conduct research, whether protein language model embeddings can be used to train a convolutional neural network for surface amino acid chemical bond recognition. Results and initial data are private.
sql-jdbc-project
This project is part of my work in the university to create a connection between Java application and postgreSQL database.
viral-capsids
The main purpose of this package is to allow user to calculate the volume of a viral capsid provided the CIF file. Although there a few more programs with different features.