imagej2

There are 1 repository under imagej2 topic.

• knime-ip / knip

  KNIME Image Processing Extension

  knimejavaimageprocessinganalysisimagejimagej2imglib2fijiscijavaintegration
  Language:Java 49

• morphonets / SNT

  The ImageJ framework for quantification of neuronal anatomy

  neuroscienceneuroanatomy-toolboximagejimagej2scijavaneuronsjanelia
  Language:Java 36

• DylanMuir / ReadImageJROI

  Matlab function to import ROIs from ImageJ

  matlabimagejimagej2importroi
  Language:MATLAB 23

• tferr / Scripts

  :microscope::cocktail: Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

  image-analysisscripts-collectionscientific-workflowsmicroscopyimagejimagej2javabeanshellpythonjythonijmgroovyrubyclojure
  Language:Java 23

• christianrickert / CU-CellSeg

  Cell segmentation of multi-channel images

  imagej2macrocell-segmentationionpathakoya-biosciencesnucleicytoplasmmembranecell-matrixmulti-channelbatchcellspixel-classifierbio-formatstrainable-weka-segmentationihcimmunohistochemistrymibiscopevectrapolaris
  Language:ImageJ Macro 4

• hadim / mm_scripts

  A collection of scripts related to Micro-Manager.

  micro-managermicroscopejavaimagejfijiimagej2
  Language:Shell 3

• morphonets / cx3d

  The Cx3D modeling framework in SciView and SNT

  neuroscienceneuroanatomy-toolboximagej2sciviewmodeling-and-simulation
  Language:Java 3

• berdal84 / Mageek-Java

  Mageek is an ImageJ Java plugin to batch process microscope images

  javaimagej2imagej-plugin
  Language:Java 1

• christianrickert / CU-IScore

  IHC scoring of multi-channel images

  imagej2macroscoringionpathakoya-biosciencesmulti-channelbatchbio-formatsdabhematoxylinstainingimmunofluorescenceihcimmunohistochemistrymibiscopevectrapolaris
  Language:ImageJ Macro 1

• imcf / python-micrometa

  :coffee: :snake: :microscope: Package for processing metadata from various light-microscopy related data formats.

  imagej2jythonjython-librarypython27
  Language:Python 1

• BenjaminEscribano / PrairieDataManager

  Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji

  fijifiji-macrofiji-pluginimagejimagej-macroimagej-pluginsimagej2
  Language:ImageJ Macro 0

• christianrickert / CU-MacroLibrary

  ImageJ2 macro library with variables and functions

  fijiimagej2macrolibrarycu-cellsegcu-iscore
  0

• fmeyenhofer / NanoZoomer-J

  ImageJ plugin for handling NDPI files.

  imagejimagej-pluginsimagej2microscopy
  Language:Java 0

• h39s / VessCoopJ

  ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis

  fijifiji-pluginimagejimagej-pluginsimagej2vessel-segmentation
  Language:Java 0

• hilaprat / evm-imagej2

  pluginevmvideo-magnificationimagej2fijifiji-plugineulerian-video-magnification
  Language:Java 0

• imcf / jython-scijava-logging

  :snake::coffee::bookmark_tabs: Jython package for using SciJava's LogService for logging.

  imagej2scijavaloggingjythonjython-library
  Language:Python 0

• jdebes / image-segmentation-imagej-plugin

  ImageJ plugin containing a collection image segmentation algorithms.

  imagej2imagej-pluginsimage-processingimage-segmentationregion-growingregion-growing-segmentation
  Language:Java 0

• 4QuantOSS / scijava-jupyter-kernel

  Write SciJava scripts in Jupyter notebook!

  binder-readyimage-analysisimagejimagej2jupyter-notebooks
  Language:Java

• imcf / jython-ome-model

  :coffee: :snake: :microscope: :bookmark: :bookmark_tabs: A mavenized package of the Open Microscopy Environment "ome-model" Python module to be used in ImageJ2.

  imagejimagej2jythonomemetadataome-metadataome-modelpython
  Language:Python

• kmader / spark-scifio

  A Spark-interface for the io.scif and other libraries to take advantage of the ImageJ2 ecosystem.

  big-datadistributed-computingimage-processingimagejimagej2scala
  Language:Scala

• ybajaj-29 / StarDist_cmd

  Command-line based, automatic image analysis pipeline to evaluate the bactericidal efficacy of polymer surface coatings against E. coli.

  automationdeep-learningimage-processingimagej2stardist