imagej2

There are 1 repository under imagej2 topic.

morphonets / SNT
The ImageJ framework for quantification of neuronal anatomy
neuroscience neuroanatomy-toolbox imagej imagej2 scijava neurons janelia fiji neuron-reconstruction
Language:Java 52
knime-ip / knip
KNIME Image Processing Extension
knime java image processing analysis imagej imagej2 imglib2 fiji scijava integration
Language:Java 50
DylanMuir / ReadImageJROI
Matlab function to import ROIs from ImageJ
matlab imagej imagej2 import roi
Language:MATLAB 27
tferr / Scripts
:microscope::cocktail: Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
image-analysis scripts-collection scientific-workflows microscopy imagej imagej2 java beanshell python jython ijm groovy ruby clojure
Language:Java 26
morphonets / cx3d
The Cx3D modeling framework in SciView and SNT
neuroscience neuroanatomy-toolbox imagej2 sciview modeling-and-simulation
Language:Java 5
himsr-lab / CU-CellSeg
Cell segmentation of multi-channel images
imagej2 macro cell-segmentation ionpath akoya-biosciences nuclei cytoplasm membrane cell-matrix multi-channel batch cells pixel-classifier bio-formats trainable-weka-segmentation ihc immunohistochemistry mibiscope vectra polaris
Language:ImageJ Macro 4
hadim / mm_scripts
A collection of scripts related to Micro-Manager.
micro-manager microscope java imagej fiji imagej2
Language:Shell 3
hilaprat / evm-imagej2
plugin evm video-magnification imagej2 fiji fiji-plugin eulerian-video-magnification
Language:Java 2
berdal84 / Mageek-Java
Mageek is an ImageJ Java plugin to batch process microscope images
java imagej2 imagej-plugin
Language:Java 1
fmeyenhofer / NanoZoomer-J
ImageJ plugin for handling NDPI files.
imagej imagej-plugins imagej2 microscopy
Language:Java 1
himsr-lab / CU-IScore
IHC scoring of multi-channel images
akoya-biosciences batch bio-formats dab hematoxylin ihc imagej2 immunofluorescence immunohistochemistry ionpath macro mibiscope multi-channel polaris scoring staining vectra
Language:ImageJ Macro 1
imcf / python-micrometa
:coffee: :snake: :microscope: Package for processing metadata from various light-microscopy related data formats.
imagej2 jython jython-library python27
Language:Python 1
BenjaminEscribano / PrairieDataManager
Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji
fiji fiji-plugin fiji-macro imagej imagej-plugins imagej-macro imagej2
Language:ImageJ Macro 0
h39s / VessCoopJ
ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis
fiji fiji-plugin imagej imagej-plugins imagej2 vessel-segmentation
Language:Java 0
himsr-lab / CU-MacroLibrary
ImageJ2 macro library with variables and functions
cu-cellseg cu-iscore fiji imagej2 library macro
0
imcf / jython-scijava-logging
:snake::coffee::bookmark_tabs: Jython package for using SciJava's LogService for logging.
imagej2 jython jython-library logging scijava
Language:Python 0
jdebes / image-segmentation-imagej-plugin
ImageJ plugin containing a collection image segmentation algorithms.
imagej2 imagej-plugins image-processing image-segmentation region-growing region-growing-segmentation
Language:Java 0
4QuantOSS / scijava-jupyter-kernel
Write SciJava scripts in Jupyter notebook!
binder-ready image-analysis imagej imagej2 jupyter-notebooks
Language:Java
imcf / jython-ome-model
:coffee: :snake: :microscope: :bookmark: :bookmark_tabs: A mavenized package of the Open Microscopy Environment "ome-model" Python module to be used in ImageJ2.
imagej imagej2 jython ome metadata ome-metadata ome-model python
Language:Python
jithin8mathew / ImageJAugmentation
An Imagej Plugin for Large Scale Image Data Augmentation
data-augmentation deep-learning fiji fiji-plugin image-augmentation image-augmentation-preprocessing image-augmentations image-augmentor image-processing imagej imagej-plugins imagej2 java-8
Language:Java
kmader / spark-scifio
A Spark-interface for the io.scif and other libraries to take advantage of the ImageJ2 ecosystem.
big-data image-processing distributed-computing scala imagej imagej2
Language:Scala
mmkkozak / IQMwR
ImageJ Fiji plugin containing 12 FR-IQA measures for grayscale images.
full-reference-image-quality-assessment full-reference-iqa image-quality-assessment imagej-plugins imagej2
Language:Java