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UW-Madison LOCI (uw-loci)

UW-Madison LOCI

uw-loci

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Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

Location:Madison, WI, USA

Home Page:https://loci.wisc.edu

Twitter:@UWMadisonLOCI

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UW-Madison LOCI's repositories

curvelets

Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

Language:MATLABLicense:NOASSERTIONStargazers:21Issues:20Issues:21

he_shg_synth_workflow

Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis

Language:PythonStargazers:9Issues:6Issues:3

collagen-fiber-metrics

Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue

Language:Jupyter NotebookStargazers:6Issues:2Issues:0

gnn-pccp

Graph neural networks for PDAC vs CP in histology

Language:Jupyter NotebookStargazers:6Issues:5Issues:0

visbio

A multi-purpose biological analysis tool

Language:JavaLicense:GPL-2.0Stargazers:6Issues:20Issues:28

github-backup-java

Backs up all GitHub-stored information about a repository to a dedicated branch.

Language:JavaLicense:NOASSERTIONStargazers:5Issues:19Issues:1

optogensim

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smart-wsi-scanner

Trainable multi-modal whole slide image scanner built on motorized microscope

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SETI

Sequential Erosion Tissue Imaging (SETI) Microscope Project

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:2Issues:19Issues:0

Flamingo_Control

Controlling a Flamingo microscope from Python

Language:PythonLicense:MITStargazers:1Issues:4Issues:0

MR_dilution_phantom

Preclinical phantom for quantitative solution comparison in a small animal magnetic resonance imaging (MRI) machine

Stargazers:1Issues:4Issues:0

multiscale

Modules for multiscale imaging at LOCI

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qp-scope

Controlling a microscope through some sort of python control interface (Pycromanager) and MicroManager

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visbio-imagej

ImageJ plugins for 3D visualization using the VisAD toolkit

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napari-live-flim

Language:PythonLicense:GPL-3.0Stargazers:0Issues:5Issues:1

basic-stitching

Based on QuPath extension template - for basic tiling with no overlap resolution

Language:GroovyLicense:MITStargazers:0Issues:4Issues:0

BasicStitching

Mike's test for 0.4.x extension

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dashboardsforMM

Jupyter Dashboards for MicroManager OpenScan-TimeTagger Operation and SmartMicroscope Modules

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eliceirilab.org

eliceirilab.org -> loci.wisc.edu

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lsm-run-time-enhancement

Super-resolution and denoising for laser scanning microscopy

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MultivariateAnalysis_FLIM

Determination of Coefficient of Variation in complex FLIM datasets under different imaging conditions

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PaQuO_test

Testing Python control of QuPath projects

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prototype.wisc.edu

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RT-FLIM

This is the Real Time FLIM Estimation project.

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search-image-sc

Image.sc search service

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spieopticamadison.org

UW SPIE/Optica website

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spieosamadison.org

spieosamadison.org -> spieopticamadison.org

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uw-loci.github.io

LOCI software articles

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website-tests

Automated tests for LOCI websites

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zebrafish_2D_segmentation

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