Evan Floden's repositories
dpa-analysis
Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)
vast-tools-nf
A Nextflow Implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data
nf-toxomix
OpenRiskNet pipeline for TGX case study: toxicology predictions based on transcriptomic profiles
stable-diffusion-nf
Proof-of-concept pipeline for stable diffusion in Nextflow and Tower
aether
Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
artful-jupyter-container
Jupyter on Ubuntu Artful Aardvark in a Singularity container.
ATACFlow
An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
bioconda-recipes
Conda recipes for the bioconda channel.
eager
A fully reproducible and state of the art ancient DNA analysis pipeline
embeded-analysis-nf
Analysis to determine the effect of the inclusion of more sequences in large MSA
flowcraft
A Nextflow pipeline assembler for genomics :whale::package:
home-assistant-config
Home Assistant Config (home-assistant.io)
jupyter-notebook-images
Repository for customized jupyter notebook images for OpenRiskNet
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nextflow
A DSL for data-driven computational pipelines
nf-co.re
Code and files for the main nf-core website >>>
nf-openshift-jupyterhub
Configuration for launching Nextflow in Openshift/k8s with JupyterHub
nf-summerschool
Nextflow training material for Summer School in Bioinformatics 2019 at EMBL-EBI
nf-workflows
Repository of Nextflow+BioContainers workflows
quickstart-nextflow
AWS Quick Start Team
rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
sc2-msspe-bioinfo
bioinformatics for sars-cov-2 msspe protocol
stimulus
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
transXpress-nf
A Nextflow pipeline for transXpress
website
Nextflow public web site
website-1
CODE CHECK project website and material (badges, logos, ...)