Scientific Filesystem's repositories
snakemake.scif
Tutorial with snakemake and Scientific Filesystem
sci-f.github.io
The Scientific Filesystem Specification and Documentation
hello-world.scif
A hello world example for a scientific filesystem
jobmaker.scif
An example container with modules to run an executable in different environments / with different job managers
metrics.scif
an example scientific filesystem to provide custom metrics and helpers for a container
scientific-example.scif
an example variant calling scientific workflow with the standard container integration format (SCI-F)
container.scif
example scientific filesystem to assess metrics across different solutions to a single problem, printing "Hello World"
flavours-of-physics.scif
containers-ftw version of https://www.kaggle.com/c/flavours-of-physics
nextflow-scif
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.