Scientific Filesystem

Scientific Filesystem's repositories

Tutorial with snakemake and Scientific Filesystem

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The Scientific Filesystem Specification and Documentation

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A hello world example for a scientific filesystem

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golang implementation of the Scientific Filesystem

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An example container with modules to run an executable in different environments / with different job managers

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an example scientific filesystem to provide custom metrics and helpers for a container

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Modular application recipes for the Scientific Filesystem (SCIF)

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an example variant calling scientific workflow with the standard container integration format (SCI-F)

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a template ready to go to easily build, test, and deploy reproducible SCIF containers!

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ctfw (containers for the win) is a base python module for competitive containers

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example scientific filesystem to assess metrics across different solutions to a single problem, printing "Hello World"

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demo / testing for containers ftw framework, testing building and running on CI

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containers-ftw version of https://www.kaggle.com/c/flavours-of-physics

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This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

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Technical Oversight Board (TOB)

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