mpileup

There are 0 repository under mpileup topic.

• TC-Hewitt / MuTrigo

  Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).

  ngs-analysisngs-pipelinengssnpsnvpythonsamtoolsmpileupfastapileupsnpsmutantpython3
  Language:Python 3

• y9c / cpup

  Convert mpileup format to base count tsv table

  bioinformaticsdna-modificationsmpileupmutationsrna-modificationssamtoolssnp-genotyping
  Language:C++ 3

• vsoch / mpileup

  run the parse pileup perl script using Docker

  mpileupperl
  Language:Perl 1

• adeschen / mpileupTools

  This python script parses a mpileup file to extract the coverage of each base at each position.

  python27mpileupparserbioinformatics-scriptsbioinformaticscoverageposition
  Language:Python

• neil-n-zhang / fastpileup

  Run BAM file pileup using multithreads

  mpileup
  Language:Python