tleonardi

nanocompore

RNA modifications detection from Nanopore dRNA-Seq data

bedparse

Python module and CLI tool to perform operations on BED files

nanocompore_paper_analyses

Analyses performed for the nanocompore paper

nanocompore_pipeline

Nextflow pipeline for nanocompore analysis

vault.sh

An interactive bash script that simplifies the management of gpg encrypted files

ggheatmap

Generate pretty ggplot2 heatmaps with row and column dendrograms

NanopolishComp

Python package for upstream preprocessing and downstream analysis of nanopolish

scripts

Various scripts that make my everyday life easier

.dotfiles

altamisa

Alternative Python API for accessing ISA-tab files

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics

Tools for bioinformatics

chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline

debtap

A script for converting .deb packages into Arch Linux packages, focused on accuracy

image_analysis_in_R

Tutorial on Image analysis using R

intim

Interactively interface Vim with interpreters

notmuch-addrlookup-c

Address lookup tool for Notmuch in C using GLib and libnotmuch

ORF_annotate

pinfish

Tools to annotate genomes using long read transcriptomics data

poreplex

A versatile sequenced read processor for nanopore direct RNA sequencing

pubmed_parser

:clipboard: A Python Parser for Pubmed Open-Access XML Subset and MEDLINE XML Dataset

pycoqc_pipeline

Nextflow pipeline that runs pycoQC on Guppy output

rmd2html

Workflow that converts Rmd files in a nicely formatted html page using twitter bootstrap

SequenceImp

Small RNA analysis pipeline

simple-java-maven-app

For an introductory tutorial on how to use Jenkins to build a simple Java application with Maven.

singularity

Repository with my singularity recipes hosted at Singularity Hub

superstruct

A simple and composable way to validate data in Javascript.

tapRNAs

Pipeline for the identification of Topological Anchor Point RNAs (tapRNAs)

tleonardi.github.io

vim-templates

create files from templates