Göke Lab

Göke Lab's repositories

minimal example implementations for bioinformatics workflow managers

Language:PythonMIT259 12 2

A curated list of awesome nanopore analysis tools.

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Language:RGPL-3.0182 7 194

Identification of differential RNA modifications from nanopore direct RNA sequencing

Language:PythonMIT134 9 145

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

Language:Jupyter Notebook105 7 19

Detection of m6A from direct RNA-Seq data

Language:PythonMIT104 7 107

Estimation of Promoter Activity from RNA-Seq data

Language:RNOASSERTION46 4 34

Nanopore RNASeq data

Language:RMIT8 10

Nanopore demultiplexing, QC and alignment pipeline

Language:NextflowMIT4 10

Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

Language:NextflowGPL-3.03 1 1

Bioinformatics containers

Language:DockerfileApache-2.02 10

A pipeline for alternative promoter analysis.

Language:NextflowMIT1 10

Language:R020

Repository to host tool-specific module files for the Nextflow DSL2 community!

Language:NextflowMIT010

Downstream analysis of Nanopore RNA data - transcriptome reconstruction and feature counts (under development)

Language:NextflowMIT02 1

proActiv workflow: Identifying active and alternative promoters from RNA-Seq data

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