BIONF

PhyloProfile

A phylogenetic profile analysis tool

fDOG

Feature-aware Directed OrtholoG search

HaMStR

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

FAS

FAS - Tool for Feature Architecture Similarity calculation

protTrace

A simulation based framework to estimate the evolutionary traceability of protein.

fCAT

Python package for fCAT, a feature-aware completeness assessment tool

taXaminer

Interactive exploration of biodiverse genome assemblies

dcc2

Dynamic core orthologs compilation tool

MATT

MATT

taxaminer-dashboard

Web-based visualization and exploration of taXaminer datasets

SPICE

Tool that utilizes FAS on entire sets of transcripts to assess the impact of alternative splicing on proteome function.

uGene

Complementary software to PhyloProfile, designed for preprocessing extensive phylogenetic profiles.

vicinator

XspecT2

XspecT is a very fast, memory efficient and easy-to-use tool to taxonomically classify raw sequence-data, whole genome assemblies or metagenomes on the species and sub-species level

BIOM

BIOlogical data Management Tool

bionf_cookiecutter

A minimalist cookiecutter for research and data science projects

cell_wall

CEPLA

Pairwise comparisons of proteins based on their epitope landscape profiles

conda-recipes

Conda recipes

data4travis

Data for testing in-house tools with travis-ci

digital_competence

g_nom

ncortho

Targeted ortholog search for miRNAs

PhyloProfileCorona

Lite version of PhyloProfile for corona data

PhyloProfileData

The PhyloProfileData package provides a collection of datasets to accompany the PhyloProfile package

PhyloRBF

phylosophy

R Toolkit for generating and exploring phylogenetic profiles

sharingiscaring

Syntgeny

XspecT