uk-biobank

There are 4 repositories under uk-biobank topic.

• kenhanscombe / ukbtools

  An R package to manipulate and explore UK Biobank data

  ukbbiobankuk-biobankrkcl-sgu
  Language:HTML 94

• benniatli / BrainAgePredictionResNet

  3D residual neural network that predicts age based on brain MRI images (implemented using TensorFlow 2).

  deep-learningmachine-learningkerasuk-biobankconvolutional-neural-networksbrain-age-predictionresidual-neural-networktensorflow2mri
  Language:Jupyter Notebook 57

• rivas-lab / covid19

  As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

  coronaviruscovid-19geneticsabo-blooduk-biobankhlapolygenic-risk-scoresblood-groupsars-cov-2
  Language:Jupyter Notebook 42

• hakyimlab / ukbrest

  ukbREST: efficient and streamlined data access for reproducible research of large biobanks

  biobankuk-biobankreproducible-researchreproducible-sciencereproducibility
  Language:Python 38

• spiros / phemap

  Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

  phecodeelectronic-health-recordsuk-biobankicd-10clinical-terminologies
  Language:Python 28

• philipdarke / ukbb-ehr-data

  Prepare UK Biobank Electronic Health Record data for research

  healthcareelectronic-health-recordsehruk-biobank
  Language:R 24

• bjcairns / ukbschemas

  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi

  rrstatsr-packageuk-biobanksqlite
  Language:R 19

• tarolangner / ukb_segmentation

  PyTorch implementation for 2.5D U-Net segmentation of UK Biobank neck-to-knee body MRI

  segmentationmriu-netkidneyparenchymapytorchdeep-learninguk-biobankneural-networkssemantic-segmentation
  Language:Python 18

• msesia / knockoffgwas

  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.

  causal-variantspopulation-structureuk-biobankgwas
  Language:C++ 14

• rmgpanw / ukbwranglr

  R package for UK Biobank data wrangling.

  packageruk-biobank
  Language:R 14

• kenhanscombe / ukbkings

  KCL Interface to UKB Project Data on Rosalind HPC cluster

  uk-biobankkings-college-londonkcl-sgu
  Language:R 13

• philipdarke / ukbbhelpr

  Helper functions for UK Biobank data

  healthcareuk-biobank
  Language:R 13

• machiela-lab / UKBBcleanR

  Prepare electronic medical record data from the UK Biobank for time-to-event analyses

  data-processingelectronic-medical-recordsrr-packagerstatsrstats-packagetime-to-eventuk-biobank
  Language:R 11

• rayanht / UK-Biobank-Visualisation

  A web interface to visualise and explore the UK Biobank

  uk-biobankdatadata-explorationdata-explorerbiomedical
  Language:Python 10

• tarolangner / mri-biometry

  Neural Networks for Deep Regression on UK Biobank neck-to-knee body MRI

  neural-networksdeep-learningdeep-regressionmribiomarkersuk-biobank
  Language:Python 7

• niekverw / ukpheno

  Create binary traits for UKbio using ICD/OPER/medication/self reports/age of diagnosis/visit-dates etc). The current output includes variables on history, study visit, future, time-to-first-event, episode-duration. this is a starting point to construct your favorite trait in ukb. The code was written on the go, so not super clean code..

  ukbiobankphenotype-predictionicd-10icd-9ruk-biobank
  Language:R 6

• kenhanscombe / ukbproject

  A python CLI to setup and manage a UKB project directory

  uk-biobankpython3kcl-sgu
  Language:Python 5

• philipdarke / ehr-codesets

  Code sets for Electronic Health Record research

  healthcareelectronic-health-recordsehrcodesetuk-biobankclinical-terminologies
  4

• rivas-lab / AncestryOmicsUKB

  Using Pre-training and Interaction Modeling for ancestry-specific disease prediction using multiomics data from the UK Biobank

  bioinformaticspretraininguk-biobank
  Language:R 1

• v-sundaresan / omnisup_agepred_semidann

  Omni-supervised domain adversarial training for WM hyperintensity segmentation

  segmentationlesion-segmentationuk-biobankomni-supervised-learningsemi-supervised-learningpytorchdeep-learningdomain-adaptationage-predictiondannisbi-2022osdaptruenet
  Language:Python 0

• aorliche / ukb-longitudinal-smt-vis

  Finding of increased Somatomotor-Visual functional connectivity in the UKB longitudinal cohort

  fmrifunctional-connectivitylongitudinal-datauk-biobankvisualsomatomotor
  Language:Jupyter Notebook

• rivas-lab / snpnet-Cox-paper

  Repo for "Fast Lasso Method for Large-scale and Ultrahigh-dimensional Cox Model with Applications to UK Biobank"

  snpnet-coxphenotypesuk-biobankcox-regressionsurvival-analysis