superphy

spfy

Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses

AMR_Predictor

Machine learning methods to predict the anti-microbial resistance of Salmonella.

docker-flask-conda

Fork adds support for Conda

acheron

Machine learning platform for bacterial genome sequence analysis

ecoliHostPredictor

Uses machine learning to predict the host given an ecoli genome

kmer

Using machine learning to predict E. coli phenotypes

phenores

Predicting bacterial AMR phenotypes from genotypes

host_predict

ont-nextflow

prairiedog

next-gen pangenome graphs for predictive genomics

prairiedog_go

probability emitting pangenome graphs

ashlynn-prop

Brucella

Brucella_Pipeline

A pipeline for the identification of unique nucleotide markes across species of Brucella

Brucella_Project_Preliminary

dgraph

Fast, Distributed Graph DB

diffpool

docker-blazegraph

Run Blazegraph in Docker

docker-tox-base

Docker base image for running tox with Python 2.6, 2.7, 3.3, 3.4, 3.5, 3.6, 3.7, PyPy, and PyPy3.

dockerfile-wizard

Use CircleCI to build custom Docker images with combinations of common languages/dependencies

enterobase_downloader

python script that downloads all the genomes from enterobase

fasta_cleaner

For cleaning fasta files

gobin

grouch

Front-end for superphy/spfy. Support submission of analysis tasks

lemongraph

Log-based transactional graph engine

manuamr

Paper for MIC prediction in Salmonella

Pans_Labyrinth

paper_platform

Paper describing the platform architecture / functionality for the semantic web

Proposal

sequann

Link and store annotations like Blast, Resfams, RGI to genome sequences for quick lookup