LooseLab

readfish

CLI tool for flexible and fast adaptive sampling on ONT sequencers

bulkvis

minotourapp

Minotour API, web and client code

Icarust

A fully featured MinKNOW simulator for testing read until experiments.

ROBIN

A package to run real time analysis of nanopore methylation data.

read_until_api_v2

Python3 Read Until API implementation

minotourcli

minotour-docker

Test for minotour docker compose test

swordfish

ROBIN_test_set_A

Control test data set for ROBIN

CNV_gene_plot

A tool to generate CNV plots with the ability to plot GOIs from a bed file.

rftools

Tools for post processing readfish data

barcode_paper_nb

Companion repo for https://www.biorxiv.org/content/10.1101/2021.12.01.470722v1

read_until_api

Read Until client library for Nanopore Sequencing

ww_nf_minimal

A minimal NXF workflow for analysing consortium wastewater data

file_creation_simulator

Move fastq files from given dir to dir

flowcellvis

Animated GIF of flow cell performance from sequencing summary file.

Icarust_docker

A stand alone docker based setup for Icarust, the readfish simulation software.

Icarust_supplementary_data

Supplementary data for the corrsponding Icarust paper. See README.md for layout of files.

LIFE4138

teaching materials for life4138

looselab.github.io

minFQ_BAM

For reading of BAM files in minFQ

NA12878

Data and analysis for NA12878 genome on nanopore

ONT_ARTIC_Summaries

simple script to parse sequencing summary files to extract useful information and stats.

ont_minimap2

Porechop

adapter trimmer for Oxford Nanopore reads

readfish-tools

Utility command line tools for helping run readfish

ROBIN_cnv_object

sturgeon

Sturgeon is a CNS neural network classifier

test_data

a small test data set