There are 4 repositories under omop topic.
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
eds-scikit is a Python library providing tools to process and analyse OMOP data
Extracting Patients' information from clinical notes and export them to an OMOP CDM database.
The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)
OMOP standardization pipeline for ICU databases
Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data
Carrot: Convenient And Reusable Rapid Omop Transformer.
Runs CQL phenotype definitions against an OMOP repository
Research with the National COVID Cohort Collaborative (N3C: https://ncats.nih.gov/n3c)
An ETL pipeline to transform your EMP data to OMOP.
A software toolkit for the interconversion of standard data models for phenotypic data
Patient 'omics data in OMOP format
omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.
Medically-informed data preprocessing for machine learning
The OMOP Common Data Model(v6) implemented in Django (v3)
A documentation-centric ETL tool, implementing transformations of a number of common clincial datasets into the OMOP CDM.
:notebook: .Net library for OMOP CDM management
Pure Julia implementation of the OMOP Common Data Model (CDM)
A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR and the OMOP CDM
Examples of exploring synthetic healthcare data from the Agency for Healthcare Research and Quality in the United States Department of Health and Human Services, and MITRE Corporation.
SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.
Federated summary algorithm for a RDB following the OMOP CDM and using Vantage6
Export Phenopackets from OMOP