omop
There are 4 repositories under omop topic.
- Language:PLpgSQL 141
callahantiff / OMOP2OBO
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
Language:Jupyter Notebook 91aphp / Cohort360-FrontEnd
A web application to find patients, build cohorts and visualize health records
Language:TypeScript 50USM-CHU-FGuyon / BlendedICU
OMOP standardization pipeline for ICU databases
Language:Python 44eds-scikit is a Python library providing tools to process and analyse OMOP data
Language:Python 40ieeta-pt / DrAC
Extracting Patients' information from clinical notes and export them to an OMOP CDM database.
Language:Python 26PEDSnet / Data-Quality-Analysis
The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)
Language:R 24BiomedSciAI / DPM360
Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data
Language:JavaScript 19- carrot-mapper
Health-Informatics-UoN / carrot-mapper
Streamlined Data Mapping to OMOP
Language:Python 19 - Language:JavaScript 17
- Language:Python 14
- Rabbit-in-a-Blender
RADar-AZDelta / Rabbit-in-a-Blender
An ETL pipeline to transform your EMP data to OMOP.
Language:Python 13 SAFEHR-data / omopcept
omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.
Language:R 13CNAG-Biomedical-Informatics / convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
Language:Perl 12National-Clinical-Cohort-Collaborative / guide-to-n3c-v1
Research with the National COVID Cohort Collaborative (N3C: https://ncats.nih.gov/n3c)
Language:TeX 12PheMA / cql-on-omop
Runs CQL phenotype definitions against an OMOP repository
Language:Java 12- Language:Java 12
- Language:TSQL 11
NCBI-Codeathons / OMOPOmics
Patient 'omics data in OMOP format
Language:HTML 9answerdigital / oxford-omop-data-mapper
A documentation-centric ETL tool, implementing transformations of a number of common clincial datasets into the OMOP CDM.
Language:C# 8centre-for-health-informatics / Django-OMOP
The OMOP Common Data Model(v6) implemented in Django (v3)
Language:Python 7bcbi / PreprocessMD.jl
Medically-informed data preprocessing for machine learning
Language:Julia 6- Language:MDX 6
JuliaHealth / OMOPCommonDataModel.jl
Pure Julia implementation of the OMOP Common Data Model (CDM)
Language:Julia 6miracum / recruit
A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR® and the OMOP CDM
Language:Java 6- omopcdm-dot-net
dermatologist / omopcdm-dot-net
:notebook: .Net library for OMOP CDM management
Language:C# 5 onefact / healthcare-data
Examples of exploring synthetic healthcare data from the Agency for Healthcare Research and Quality in the United States Department of Health and Human Services, and MITRE Corporation.
Language:Jupyter Notebook 5- Language:Shell 4
ABMI / SOCRATex
SOCRATex: Staged Optimization of Curation, Regularization, and Annotation of clinical Text
Language:R 3- gocdmLanguage:Go 3
- Language:Python 3
stjude-biohackathon / KIDS23-Team3
SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.
Language:R 3DZD-eV-Diabetes-Research / dzd-omop-cdm-python-models
A Python data class representation of the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)
Language:Python 2- Language:Python 2
sidataplus / omop_linkage_dbt
Facilitate the linkage of OMOP CDM databases from different sources
