BiomedSciAI

causallib

A Python package for modular causal inference analysis and model evaluations

histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

fuse-med-ml

A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

biomed-multi-alignment

We introduce ibm/biomed.omics.bl.sm.ma-ted-458m. A biomedical foundation model trained over 2 billion biological samples across multiple modalities, including proteins, small molecules, and single-cell gene data.

biomed-multi-view

This repository contains the implementation of the Multi-view Molecular Embedding with Late Fusion (MMELON) architecture. MMELON combines molecular representations from three views — image, graph, and text —to learn a joint embedding that can be finetuned for downstream tasks in chemical and biological property prediction.

DPM360

Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

fuse-drug

FuseMedML based molecular biochemistry library for drug discovery/repurposing

gene-benchmark

Benchmark gene representations from different model families

Geno4SD

An python omics data toolkit for the analysis across biological scales

r-BRICS

Revised breaking of retrosynthetically interesting chemical substructures (r-BRICS) – a revised BRICS module based on rdKit that breaks ring structures and carbon chains

multimodal-models-toolkit

.github