MIT Laboratory for Computational Physiology

MIT-LCP

Research on improving health care through data analysis, including use of MIMIC-III and other data sources

Cambridge, MA

http://lcp.mit.edu

MIT Laboratory for Computational Physiology's repositories

mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

Language:Jupyter NotebookMIT2349 135 1171

wfdb-python

Native Python WFDB package

Language:Jupyter NotebookMIT724 51 294

eicu-code

Code and website related to the eICU Collaborative Research Database

Language:Jupyter NotebookMIT294 41 215

mimic-omop

Mapping the MIMIC-III database to the OMOP schema

Language:PLpgSQLMIT122 32 73

mimic-website

Website for the MIMIC Critical Care Database (currently version MIMIC-III)

Language:CSSMIT95 36 140

physionet

A collection of tools for working with the PhysioNet repository.

Language:PythonMIT67 24 154

physionet-build

The new PhysioNet platform.

Language:JavaScriptBSD-3-Clause54 17 887

oracle2postgres

Migrate data from an Oracle database to a Postgres database

Language:PythonMIT29 9 21

sccm-datathon

Resources for the Society of Critical Care Medicine (SCCM) Datathon

Language:Jupyter NotebookMIT18 90

mimic-iv-website

Website for MIMIC-IV

Language:HTMLMIT14 100

bidmc-datathon

Materials for the BIDMC datathon (Sat 29 Feb 2020)

Language:Jupyter NotebookMIT11 40

gossis

Extracting consistent concepts from multiple databases

Language:Jupyter Notebook9 8 19

hack-aotearoa

Sample code for Hack Aotearoa 2023

Language:Jupyter NotebookMIT9 50

waveform-annotation

Platform for annotating physiological waveform data.

Language:Python9 12 14

critical-data

Website for critical-data

Language:CSSMIT8 12 4

bst209

Course materials for BST209

Language:HTMLMIT600

datathon-package

Pip installable package containing helper functions for datathons

Language:PythonMIT5 60

vancomycin-nephrotoxicity

Study in eICU-CRD about vancomycin and associated nephrotoxicity

Language:Jupyter Notebook5 9 3

citation-tracker

Tools for tracking citations to MIMIC, PhysioNet etc.

Language:Jupyter NotebookMIT3 15 1

ARCHIVED-wfdb-plus

The Waveform Database Software Package

Language:CGPL-2.01 2 3

cwmed

A Python package that facilities the conversion of clinical terminology between two different coding systems for interoperability.

Language:PythonMIT100

datathon-gossis

Resources for the GOSSIS datathon in Pittsburgh

Language:Jupyter NotebookMIT1 70

downcast

Tools for unpacking and converting data from the DWC system

Language:PythonGPL-3.01 9 8

lcp-website

Website for the LCP Laboratory https://lcp.mit.edu

Language:HTML1 14 4

mimic-iv-datathon

Language:Jupyter Notebook1 90

metaann

Collaborative labelling of events in physiological waveforms

Language:CGPL-2.0060

mimic-echo

Structured data from echocardiogram reports

MIT070

mimic-iv-demo-omop

MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.

Language:PythonApache-2.0000

scrub_faces

Scrub/blur faces in a dataset of images.

Language:PythonMIT0140

the-bias-glossary

000