PhEMA's repositories
cql-on-omop
Runs CQL phenotype definitions against an OMOP repository
phema-author
PhEMA Authoring Tool
phekb-phenotypes
A selection of PheKB phenotypes represented using CQL and FHIR.
vsac_to_omop
This is a prototype application which transfers VSAC value sets to OMOP repository as concept sets
phema-workbench-api
The JAVA API for the PhEMA Workbench.
phema-workbench-deploy
Deployment config for PhEMA Workbench.
heart-failure-use-case
Artifacts for the PhEMA heart failure use case phenotype
omoponfhir-extractor
Tool for extracting OMOP data as FHIR resource using OMOP on FHIR.
clinical_quality_language
Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.
CQL-Testing-Framework
AHRQ-CDS CQL Testing Framework to allow CQL authors to more easily develop and run test cases for validating CQL-based CDS logic, regardless of how that CQL was developed (e.g., by hand, in the AT, etc). This is intended to be a developer-facing tool, run on the command-line; it has no server components.
cql_engine
Clinical Quality Language Evaluation Engine
cql_execution_service
Clinical Quality Language Execution Service
deployments
Kubernetes cluster configs to use with Flux.
ohdsi-atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
ohdsi-webapi
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
omoponfhir-main
Main OMOPonFHIR Settings
omoponfhir-omopv5-jpabase
OMOPv5 JPABase to support OMOPonFHIR
omoponfhir-stu3-server
OMOPonFHIR STU3 Server
phekb-export
PheKB data exporter and viewer
phema-hapi-fhir
PhEMA HAPI FHIR JPA Server
phema-population-cql
Simple tool for running a CQL library for a population of patients.
phema-workbench-app
The parts of the PhEMA Workbench that run in the browser.
phema.github.io
The Phenotype Execution Modeling Architecture (PhEMA) project
terminology-manager
Tool for converting terminology content in various formats into FHIR resources.
vsac-wrapper
A VSAC-enabled code service for the CoffeeScript CQL Execution project