Greater Paris University Hospitals (AP-HP)

Greater Paris University Hospitals (AP-HP)'s repositories

edsnlp

Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.

Language:PythonBSD-3-Clause132 10 93

eds-pseudo

EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports

Language:PythonNOASSERTION62 5 3

EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-learning-based approaches to classify text blocs between body and meta-data.

Language:PythonBSD-3-Clause56 2 3

Cohort360-FrontEnd

A web application to find patients, build cohorts and visualize health records

Language:TypeScriptApache-2.051 7 5

eds-scikit

eds-scikit is a Python library providing tools to process and analyse OMOP data

Language:PythonBSD-3-Clause42 1 11

heemod

Markov Models for Health Economic Evaluations

Language:RGPL-3.016 2 17

edsteva

EDS-TeVa provides a set of tools that aims at modeling the adoption over time and across space of the Electronic Health Records.

Language:PythonBSD-3-Clause13 1 8

confit

Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Python type annotations, minimal configuration files and a robust CLI.

Language:PythonBSD-3-Clause11 2 6

foldedtensor

PyTorch extension for handling deeply nested sequences of variable length

Language:PythonBSD-3-Clause11 2 3

Cohort360-Back-end

Part of the Cohort360 Project @ https://github.com/aphp/Cohort360, backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Administration Portal @ https://github.com/aphp/Cohort360-AdministrationPortal

Language:PythonApache-2.07 5 1

IG-fhir-dm

FHIR Implementation Guide for Data Management

Language:PythonNOASSERTION700

rgho

:globe_with_meridians:Access WHO Global Health Observatory Data From R

Language:RGPL-3.05 2 2

edstuto

A variety of tutorials introducing some issues related to the analysis of health real world data available for researchers in clinical data warehouses.

Language:Jupyter Notebook4 20

fhir-mapbuilder

FHIR MapBuilder is a Visual Studio Code extension designed to facilitate the edition of FHIR StructureMap resources using FHIR Mapping Language (FML).

Language:TypeScriptNOASSERTION400

redcap-helmchart

APHP REDCap cloud-native and vendor-agnostic HelmChart

Language:SmartyApache-2.04 40

IG-fhir-formbuilder

The FHIR Implementation Guide of the FormBuilder is available:

Language:GLSLNOASSERTION300

Cohort360-QueryExecutor

Language:ScalaMPL-2.02 40

IG-FHIR-EDS-SOCLE-COMMUN

Guide d'implémentation FHIR du socle EDS

Language:GLSLMIT2 1 2

mkdocs-eds

Various plugins and extensions to customize mkdocs

Language:CSSApache-2.0200

Cohort360

A web application to find patients, build cohorts and visualize health records

Language:HTMLApache-2.01 40

formbuilder

The AP-HP FormBuilder allows building (creating and editing) forms in FHIR - R4 format (Questionnaire). It is based on the NLM FormBuilder, an open-source project developed by the Lister Hill National Center for Biomedical Communication (LHNCBC).

Language:TypeScriptNOASSERTION100