Greater Paris University Hospitals (AP-HP)

Greater Paris University Hospitals (AP-HP) 's repositories

edsnlp

Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.

Language:PythonBSD-3-Clause97 8 68

Cohort360

A web application to find patients, build cohorts and visualize health records

Language:TypeScriptApache-2.037 7 5

EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-learning-based approaches to classify text blocs between body and meta-data.

Language:PythonBSD-3-Clause34 4 2

eds-scikit

eds-scikit is a Python library providing tools to process and analyse OMOP data

Language:PythonBSD-3-Clause31 1 10

eds-pseudo

EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports

Language:PythonBSD-3-Clause29 2 2

spark-etl

Better bridge apache spark and postgresql

Language:ScalaApache-2.022 4 15

py-hdfs-mount

Mount HDFS with fuse, works with kerberos!

Language:Python17 30

edsteva

EDS-TeVa provides a set of tools that aims at modeling the adoption over time and across space of the Electronic Health Records.

Language:PythonBSD-3-Clause11 1 8

heemod

Markov Models for Health Economic Evaluations

Language:RGPL-3.011 2 14

confit

Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Python type annotations, minimal configuration files and a robust CLI.

Language:PythonBSD-3-Clause10 2 3

foldedtensor

PyTorch extension for handling deeply nested sequences of variable length

Language:PythonBSD-3-Clause10 2 1

HiveQLKernel

HiveQL Jupyter Kernel

Language:PythonMIT10 5 26

UimaOnSpark

Way to run Uima Pipelines on Apache Spark

Language:Scala10 1 4

dsfaker

Time series Generator

Language:PythonMIT6 5 11

rgho

:globe_with_meridians:Access WHO Global Health Observatory Data From R

Language:RGPL-3.05 2 2

SPHERE

A research PACS Solution adapted to Big Data Plateform

Language:PythonGPL-3.05 10

edstuto

A variety of tutorials introducing some issues related to the analysis of health real world data available for researchers in clinical data warehouses.

Language:Jupyter Notebook4 20

uima-aphp

A set of module for multiple NLP pipelines

Language:JavaGPL-3.02 1 1

edspdf-mupdf

MuPDF extension for EDS-PDF

Language:PythonAGPL-3.0020

edspdf-poppler

Poppler extension for EDS-PDF

Language:PythonGPL-2.002 1

spaCy

💫 Industrial-strength Natural Language Processing (NLP) in Python

Language:PythonMIT000

thinc

🔮 A refreshing functional take on deep learning, compatible with your favorite libraries

Language:PythonMIT000