PEDSnet

Data_Models_Public

The home for usage standards for the network's data models: PEDSnet/OMOP and PCORnet for PEDSnet.

pedsnetcdm_to_pcornetcdm

SQL code to transform data from PEDSnet CDM to PCORnet CDM.

Variable-Dictionary

(Under Development) The repository for variable definitions and codesets for PEDSnet studies

IgAVN

Code and data used to create the cohort of children with IgA vasculitis with nephritis and assess their outcomes

tide

tide_orchestration

asthma_feasibility

MHCC

Mental Health Cluster Codes

PASC

pasc_ml_phenotype

pedsnetdcc

CLI tool for PEDSnet data coordinating center ETL tasks

Subspecialty_Analysis

Determine the proportion of study eligible children between the ages of 0 and 20 who used pediatric subspeciality care at least once in a given calendar year between 2010 and 2021 in any care setting (i.e., in an inpatient hospital, outpatient, emergency department, or community-based practice care setting), stratified by age group and sex.

tympanostomy

Codesets for Otitis Media/tympanostomy studies

acg_2024

airflow_pedsnetcdm_to_pcornetcdm

Migration of Old pedsnetcdm_to_pcornetcdm into Airflow utilizing spark

ckd_progression

Codesets for study "Using Electronic Health Record Data to Evaluate Kidney Function Decline in Children with Chronic Kidney Disease"

degauss_to_pcornet

modeling degauss output csv of FIPS codes into the PCORnet Data Model

dqa_library

PEDSnet Network Data Quality Checks

dqa_processing

Component of the PEDSnet network data quality pipeline that reshapes and performs computations on the output from dqa_library

dqa_shiny

Code for generating an R shiny dashboard displaying data quality check output

I2B2_ON_PCORNET_CDM

infomodels_database

Package for creating and dropping tables, indexes, and constraints, and loading data

NES

Code and codesets used to create the cohort of neonates with neonatal enteroviral sepsis and assess their outcomes.

pcornet_to_omop_and_i2b2_views

Repository for SQL used to create OMOP and I2B2 views given a PCORnet CDM loaded to Snowflake

pcornetcdm_to_pedsnetcdm

PEDSnet-Lessidentify

Simple tools to reduce privacy risk in individual-level datasets

r_docker_demo

A demo to build a docker container and connect to database

recover_pasc_subphenotype_manuscript

skeletal_outcomes

Codesets for the manuscript "Skeletal Outcomes in Children and Young Adults with Glomerular Disease"

ssdqa_functions

This repository contains the functions that allow users to execute checks selected and defined in the SSDQA Shiny app interface