imaging-solutions
There are 1 repository under imaging-solutions topic.
TheJacksonLaboratory / ezomero
A module with convenience functions for writing Python code that interacts with OMERO.
Language:Python 32medulla-tech / medulla
Medulla RMM is a radically simple IT automation and lifecycle management tool that offers the ability to handle repetitive tasks, quickly deploy applications, operating system and proactively manage them all where ever they are.
Language:Python 22A dataset for loading zarr files to be used in machine learning training pipelines
Language:Python 14A relabeling tool for tiled segmentation with Dask
Language:Python 8A module and scripts for working with OMERO
Language:Python 6Tutorials for using scikit-image, written for The Jackson Laboratory
A deep learning model for histological image compression and decompression
Language:Python 3Tools to visualize HCS data stored in zarr files
Language:Jupyter Notebook 3Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster
Language:Shell 3code and data for 'Intermediate Image Analysis - Images as Signals' workshop
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material for the "OMERO for developers" workshop.
Language:Jupyter Notebook 2romi / plant-imager
ROMI library controlling the PlantImager (hardware) or the VirtualPlantImager (Blender) to acquire images of (virtual) single potted plants.
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Repo for generating OMERO reports/dashboards
Language:Python 1Container for preprocessing slides using HistoQC
Language:Python 1U-Net model for glomeruli segmentation in Whole Slide Images
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Convolutional Autoencoder (CAE) codec for image compression and storing in NGFF (Zarr) format.
Language:PythonNotebooks for the workshop Deep Learning for Image Analysis with PyTorch
Language:Jupyter NotebookAutomatically generating bounding boxes for OMERO slidescans
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Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
Language:PythonScript for generating annotation keys for KOMP images in OMERO
Language:PythonRepo with the inner workings for a container-based LAMA workflow.
Language:ShellCode for deploying a dashboard for OMERO using flask and plotly
Language:Pythonan example script to create MapAnnotations for wells in a plate based on a csv file
Language:PythonAn algorithm to sub-divide polygons that self-overlap
Language:PythonViscomsoft / Scanner-Pro-SDK-ActiveX-x64
TWAIN Scanning SDK for 64 bit and 32 bit MS Access, VB.NET, C#, Delphi and Visual C++ and 32 bit Visual Basic 6 and VFP.
Language:C#