tlambert03

FPbase

The Fluorescent Protein Database

cmap

Scientific colormaps for python, with only numpy dependency

pycudadecon

Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy

ome-types

native Python dataclasses for the OME data model

nd2

Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction

PSFmodels

Python bindings for scalar and vectorial models of the 3D microscope point spread function.

napari-omero

Browse your OMERO database from within napari.

LLSpy

Lattice light-sheet post-processing utility.

napari-ndtiffs

A napari plugin to load & deskew folders of lattice light sheet TIFFs

mrc

Read and write .mrc and .dv (deltavision) image file format.

microsim

napari

a fast, interactive, multi-dimensional image viewer for python

superqt

Missing widgets and components for Qt-python

microvis

pymmcore-plus

A convenience layer on pymmcore (micro-manager) providing improved pythonic experience and event management

magicgui

build GUIs from python functions, using magic.

acquire-python

Acquire: a multi-camera video streaming software focusing on microscopy

app-model

Generic application schema implemented in python.

fpbase2

FPbase rewritten with sqlmodel and fastapi

lambda-example

example for using amazon lambda with container

mmCoreAndDevices

Micro-Manager's device control layer, written in C++

ndv

psygnal

Python callback/event system. Modeled after Qt Signals & Slots (but independent of Qt)

pygfx

A python render engine running on wgpu.

pymmcore

Python bindings for MMCore, Micro-Manager's device control layer

pymmcore-widgets

A set of Qt-based widgets onto the pymmcore-plus model

pyrepo

pyrepo-copier

Template for creating a new python repository

setup-headless-display-action

GitHub Action to setup a headless display on Linux and Windows (not needed on MacOS)

tensorstore-stubs

Unofficial type stubs for tensorstore